X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.gradle;h=f02d8ad04e41af02ad2a8e737d3e22313a582c8b;hb=refs%2Fheads%2Fbug%2FJAL-247autoIdWidthSeqMarker;hp=995afaf9b405cea0ca1c4415ea4d72c8d3ce0f49;hpb=324fa51353c512d53de5bee94a519561208266b8;p=jalview.git

diff --git a/build.gradle b/build.gradle
index 995afaf..f02d8ad 100644
--- a/build.gradle
+++ b/build.gradle
@@ -56,10 +56,14 @@ ext {
   reportRsyncCmd = false
   buildDist = true
   buildProperties = buildPropertiesFile
+  getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher
   switch (CHANNEL) {
 
     case "BUILD":
     // TODO: get bamboo build artifact URL for getdown artifacts
+    getdown_channel_base = bamboo_channelbase
+    getdown_channel_name = bamboo_planKey + '/'+JAVA_VERSION
+    getdown_app_base = bamboo_channelbase + '/'+ bamboo_planKey + bamboo_getdown_channel_suffix + '/'+JAVA_VERSION
     getdown_app_dir = getdown_app_dir_alt
     buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
     break
@@ -103,6 +107,7 @@ ext {
       buildDist = false
     }
     reportRsyncCommand = true
+    getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher_local
     break
 
     case "DEVELOP":
@@ -136,6 +141,7 @@ ext {
     getdown_app_base = file(getdownWebsiteDir).toURI().toString()
     getdown_app_dir = getdown_app_dir_alt
     buildProperties = jalviewDir + "/" + classesDir +"/" + buildPropertiesFile
+    getdownLauncher = jalviewDir + '/' + getdown_lib_dir + '/' + getdown_launcher_local
     break
 
     default: // something wrong specified
@@ -150,7 +156,6 @@ ext {
   //getdownJ11libDir = getdownWebsiteDir + '/' + getdown_j11lib_dir
   getdownResourceDir = getdownWebsiteDir + '/' + getdown_resource_dir
   getdownInstallDir = getdownWebsiteDir + '/' + getdown_install_dir
-  getdownLauncher = jalviewDir + '/' + getdown_launcher
   getdownFilesDir = jalviewDir + '/' + getdown_files_dir + '/' + JAVA_VERSION + '/'
   getdownFilesInstallDir = getdownFilesDir+"/"+getdown_install_dir
   /* compile without modules -- using classpath libraries
@@ -636,7 +641,7 @@ task copyHelp(type: Copy) {
     exclude '**/*.gif'
       exclude '**/*.jpg'
       exclude '**/*.png'
-      filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION])
+      filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
   }
   from(inputDir) {
     include '**/*.gif'
@@ -747,6 +752,12 @@ task linkCheck(type: JavaExec) {
   outputs.file(helplinkscheckertouchfile)
 }
 
+// import the pubhtmlhelp target
+ant.properties.basedir = "$jalviewDir"
+ant.properties.helpBuildDir = jalviewDirAbsolutePath+"/$classes/$helpDir"
+ant.importBuild "$utilsDir/publishHelp.xml"
+
+
 task cleanPackageDir(type: Delete) {
   delete fileTree("$jalviewDir/$packageDir").include("*.jar")
 }
@@ -956,6 +967,9 @@ task getdownWebsite() {
 
     copy {
       from getdownLauncher
+      if (file(getdownLauncher).getName() != getdown_launcher) {
+        rename(file(getdownLauncher).getName(), getdown_launcher)
+      }
       into project.ext.getdownWebsiteDir
     }
 
@@ -964,6 +978,9 @@ task getdownWebsite() {
         from getdown_txt
         from getdownLauncher
         from getdownWebsiteDir+"/"+getdown_build_properties
+        if (file(getdownLauncher).getName() != getdown_launcher) {
+          rename(file(getdownLauncher).getName(), getdown_launcher)
+        }
         into getdownInstallDir
       }
 
@@ -978,6 +995,9 @@ task getdownWebsite() {
       from launch_jvl
       from getdownLauncher
       from getdownWebsiteDir+"/"+getdown_build_properties
+      if (file(getdownLauncher).getName() != getdown_launcher) {
+        rename(file(getdownLauncher).getName(), getdown_launcher)
+      }
       into getdownFilesDir
     }
 
@@ -998,7 +1018,9 @@ task getdownDigest(type: JavaExec) {
   group = "distribution"
   description = "Digest the getdown website folder"
   dependsOn getdownWebsite
-  classpath = files(jalviewDir + '/' + getdown_core, jalviewDir+'/'+getdown_launcher)
+  doFirst {
+    classpath = files(getdownWebsiteDir + '/' + getdown_launcher)
+  }
   main = "com.threerings.getdown.tools.Digester"
   args project.ext.getdownWebsiteDir
   inputs.dir(project.ext.getdownWebsiteDir)
@@ -1151,56 +1173,77 @@ clean {
 task sourceDist (type: Tar) {
   
   def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
-  archiveFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
+  def outputFileName = project.name + "_" + VERSION_UNDERSCORES + ".tar.gz"
+  // cater for buildship < 3.1 [3.0.1 is max version in eclipse 2018-09]
+  try {
+    archiveFileName = outputFileName
+  } catch (Exception e) {
+    archiveName = outputFileName
+  }
   
   compression Compression.GZIP
   
-  from jalviewDir
   into project.name
- 
-   
-  exclude (".*")
-  exclude ("**/.*")
-  exclude ("*.class")
-  exclude ("**/*.class")
-  include (eclipse_extra_jdt_prefs_file)
-  include ("AUTHORS")
-  include ("CITATION")
-  include ("FEATURETODO")
-  include ("JAVA-11-README")
-  include ("FEATURETODO")
-  include ("LICENSE")
-  include ("README")
-  include ("RELEASE")
-  include ("THIRDPARTYLIBS")
-  include ("build.gradle")
-  include ("gradle.properties")
-  include ("$sourceDir/*.java")
-  include ("$sourceDir/**/*.java")
-  include ("$sourceDir/**/*.cdr")
-  include ("$j8libDir/**/*.jar")
-  include ("$j11libDir/**/*.jar")
-  include ("$resourceDir/**/*")
-  include ("$helpDir/**/*")
-  include ("$schemaDir/**/*")
-  include ("$utilsDir/**/*")
-  include ("$docDir/**/*")
-  include ("$examplesDir/**/*")
-  include ("getdown/**/*")
-  //include ("jalview-jalopy.xml")
-  //include ("JalviewApplet.jpx")
-  //include ("JalviewX.jpx")
-  //include ("nbbuild.xml")
-  //include ("nbproject/genfiles.properties")
-  //include ("nbproject/project.properties")
-  //include ("nbproject/project.xml")
-  
+
+  def EXCLUDE_FILES=["build/*","bin/*","test-output/","test-reports","tests","clover*/*"
+  ,".*"
+  ,"benchmarking/*"
+  ,"**/.*"
+  ,"*.class"
+  ,"**/*.class","$j11modDir/**/*.jar","appletlib","**/*locales"
+  ,"*locales/**",
+  ,"utils/InstallAnywhere"] 
+  def PROCESS_FILES=[   "AUTHORS",
+  "CITATION",
+  "FEATURETODO",
+  "JAVA-11-README",
+  "FEATURETODO",
+  "LICENSE",
+  "**/README",
+  "RELEASE",
+  "THIRDPARTYLIBS","TESTNG",
+  "build.gradle",
+  "gradle.properties",
+  "**/*.java",
+  "**/*.html",
+  "**/*.xml",
+  "**/*.gradle",
+  "**/*.groovy",
+  "**/*.properties",
+  "**/*.perl",
+  "**/*.sh"]
+
+  from(jalviewDir) {
+    exclude (EXCLUDE_FILES)
+    include (PROCESS_FILES)
+    filter(ReplaceTokens, beginToken: '$$', endToken: '$$', tokens: ['Version-Rel': JALVIEW_VERSION,'Year-Rel': getDate("yyyy")])
+  }
+  from(jalviewDir) {
+    exclude (EXCLUDE_FILES)
+    exclude (PROCESS_FILES)
   exclude ("appletlib")
   exclude ("**/*locales")
   exclude ("*locales/**")
   exclude ("utils/InstallAnywhere")
-  exclude (getdown_files_dir)
+
+    exclude (getdown_files_dir)
   exclude (getdown_website_dir)
 
+  // exluding these as not using jars as modules yet
+  exclude ("$j11modDir/**/*.jar")
+}
+//  from (jalviewDir) {
+//    // explicit includes for stuff that seemed to not get included
+//    include(fileTree("test/**/*."))
+//    exclude(EXCLUDE_FILES)
+//    exclude(PROCESS_FILES)
+//  }
 }
 
+task helppages  {
+  dependsOn copyHelp
+  dependsOn pubhtmlhelp
+  
+  inputs.dir("$classes/$helpDir")
+  outputs.dir("$helpOutputDir")
+}