X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=30115c25604a6a4ae0373ec56f29111ac6df31c1;hb=6d856a57af19523f5a6721ad22df504f771a23ff;hp=2333ea36b236dac5564e846c958ddf4debf07719;hpb=4d1942fa0930edb10e9dff403b252463e898329a;p=jalview.git

diff --git a/build.xml b/build.xml
index 2333ea3..30115c2 100755
--- a/build.xml
+++ b/build.xml
@@ -38,8 +38,9 @@
     <echo message="testng - run jalview's tests via testNG. Default group is '${testng-groups}'" />
     <echo message="      you can specify particular test groups as a list via -Dtestng-groups=" />
     <echo message="See docs/building.html and the comments in build file for other targets." />
-    <echo message="note: compile and makeApplet require the property java118.home to be set to point to a java 1.1.8 jdk." />
+    <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=PathtoJDK/lib which is the lib directory in the JDK install that contains rt.jar " />
     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
+    <echo message="Useful -D flags: -Dclover.jar to specify path to openclover for testng coverage report" />
   </target>
 
 
@@ -182,17 +183,14 @@
     </path>
     <property name="source.dist.name" value="${basedir}/jalview-src.tar.gz" />
     <!-- The Location of the java 1.1.8 jdk -->
-    <!--<property name="java118.home" value="C:\Sun\jdk1.1.8" /> -->
     <property name="java118.home" value="${java.home}" />
-    <!-- <property name="applet.jre.tools" value="${java118.home}/lib/classes.zip" />
-		-->
     <!-- jre for 1.4 version -->
-    <property name="applet.jre.tools" value="${java.home}/lib/rt.jar" />
+    <property name="applet.jre.tools" value="${java118.home}/lib/rt.jar" />
 
     <!-- the classpath for building the 1.1 applet -->
     <path id="jalviewlite.deps">
       <fileset dir="${java118.home}">
-        <include name="lib/classes.zip" />
+        <include name="lib/rt.jar" />
       </fileset>
       <fileset dir="${java.home}/lib">
         <include name="plugin.jar" />
@@ -311,6 +309,13 @@
   </target>
 
   <target name="buildindices" depends="init, prepare" unless="help.uptodate">
+    <replace value="${JALVIEW_VERSION}">
+      <replacetoken><![CDATA[$$Version-Rel$$]]></replacetoken>
+      <fileset dir="${outputDir}/${helpDir}">
+        <include name="help.jhm" />
+      </fileset>
+    </replace>
+
     <java classname="com.sun.java.help.search.Indexer" classpathref="build.classpath" fork="true" dir="${outputDir}/${helpDir}">
       <arg line="html" />
     </java>
@@ -462,8 +467,7 @@
     <!-- add the add-modules j2se attribute for java 9 -->
     <replace file="${jnlpFile}" value="j2se version=&quot;1.8+&quot; initial-heap-size=&quot;${inih}&quot; max-heap-size=&quot;${maxh}&quot; java-vm-args=&quot;--add-modules=java.se.ee --illegal-access=warn&quot;">
           <replacetoken>j2se version="1.8+"</replacetoken>
-           
-        </replace>
+    </replace>
   </target>
 
   <target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
@@ -631,7 +635,7 @@
       <include name="plugin.jar" />
     </fileset>
   </path>
-  <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+  <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard_5.3.3.jar" />
 
   <proguard verbose="true" >
     <injar file="in.jar" />