X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=4488cbc4c7f89976eab0cb83764a8859a4afaf21;hb=b11a3470c5ccd9eeb4e80c1e85b282dcc8111b4a;hp=a7a292be7515d96697898663c255f83cd5064c17;hpb=f74c433b9f3ff2bd055e19f671b0568c97ba0c5b;p=jalview.git

diff --git a/build.xml b/build.xml
index a7a292b..4488cbc 100755
--- a/build.xml
+++ b/build.xml
@@ -20,6 +20,9 @@
 <project name="jalviewX" default="usage" basedir="."
  xmlns:if="ant:if"
     xmlns:unless="ant:unless">
+  <taskdef classpath="${clover.jar}" resource="cloverlib.xml" if:set="clover.jar"/>
+  <clover-env if:set="clover.jar"/>
+
   <target name="help" depends="usage" />
   <target name="usage" depends="init">
     <echo message="~~~Jalview Ant build.xml Usage~~~~" />
@@ -40,6 +43,7 @@
     <echo message="See docs/building.html and the comments in build file for other targets." />
     <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=PathtoJDK/lib which is the lib directory in the JDK install that contains rt.jar " />
     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
+    <echo message="Useful -D flags: -Dclover.jar to specify path to openclover for testng coverage report" />
   </target>
 
 
@@ -130,7 +134,8 @@
     <property name="docDir" value="doc" />
     <property name="sourceDir" value="src" />
     <property name="schemaDir" value="schemas" />
-    <property name="outputDir" value="classes" />
+    <property name="outputDir" value="classes" unless:set="clover.jar"/>
+    <property name="outputDir" value="cloverclasses" if:set="clover.jar"/>
     <property name="packageDir" value="dist" />
     <property name="outputJar" value="jalview.jar" />
     <!-- Jalview Applet JMol Jar Dependency -->
@@ -299,6 +304,7 @@
       verbose="2">
       <classpath>
         <pathelement location="${testOutputDir}" />
+        <pathelement location="${clover.jar}" if:set="clover.jar"/>
         <path refid="test.classpath" />
       </classpath>
       <jvmarg value="--add-modules=java.se.ee" if:set="java9"/>
@@ -540,6 +546,9 @@
 </target>
 
 <target name="makedist" depends="build, buildPropertiesFile, linkcheck, buildindices">
+  <fail if="clover.jar">
+    Ignoring request to build jalview distribution with clover-instrumented classes
+  </fail>
   <!-- make the package jar if not already existing -->
   <mkdir dir="${packageDir}" />
   <!-- clean dir if it already existed -->
@@ -985,27 +994,123 @@
     <arg value="-nointernet" />
   </java>
 </target>
-  
-  <target name="eclipse-install" depends="init,prepare">
-    
-    <property name="eclipseTempFile" value="eclipse-jee-oxygen-R-linux-gtk-x86_64.tar.gz"/>
-    <property name="eclipseInstallURL" value="http://mirror.csclub.uwaterloo.ca/eclipse/technology/epp/downloads/release/oxygen/R/eclipse-jee-oxygen-R-linux-gtk-x86_64.tar.gz"/>
-    <property name="java2scriptURL" value="https://github.com/BobHanson/java2script/blob/master/sources/net.sf.j2s.core/dist/dropins/net.sf.j2s.core.jar?raw=true"/>
-    
-    <get url="${eclipseInstallURL}" dest="${eclipseTempFile}"/>
-    <untar compression="gzip" src="${eclipseTempFile}" dest="eclipse-inst"/>
-    <get url="${java2scriptURL}" dest="eclipse-inst/dropins/net.sf.j2s.core.jar"/>
-    
+
+<target name="eclipse-install" depends="init,prepare">
+
+  <property name="eclipseTempFile" value="eclipse-jee-oxygen-R-linux-gtk-x86_64.tar.gz"/>
+  <property name="eclipseInstallURL" value="http://mirror.csclub.uwaterloo.ca/eclipse/technology/epp/downloads/release/oxygen/R/eclipse-jee-oxygen-R-linux-gtk-x86_64.tar.gz"/>
+  <property name="java2scriptURL" value="https://github.com/BobHanson/java2script/blob/master/sources/net.sf.j2s.core/dist/dropins/net.sf.j2s.core.jar?raw=true"/>
+
+  <get url="${eclipseInstallURL}" dest="${eclipseTempFile}"/>
+  <untar compression="gzip" src="${eclipseTempFile}" dest="${eclipse-inst}"/>
+
+  <!-- not needed since we ship transpiler with source
+    <get url="${java2scriptURL}" dest="eclipse-inst/dropins/net.sf.j2s.core.jar" /> -->
+
+</target>
+
+<target name="build-site" depends="init,prepare,compile-site,unzip-to-site">
+  <!-- closure compile -->
+  <!-- tarball -->
+  <tar compression="gzip" destfile="site.tar.gz">
+    <tarfileset dir="site" />
+  </tar>
+</target>
+<target name="prepare-site" depends="init,prepare">
+  <property name="swingjsdir" value="swingjs"/>
+  <property name="eclipse-inst" value="/home/bamboo/buildtools/eclipse/eclipse-js"/>
+  <property name="eclipse-exec" value="${eclipse-inst}/eclipse"/>
+  <property name="site" value="site"/>
+  <!-- where the eclipse js workspace has been initialised -->
+  <property name="eclipse-work" value="/home/bamboo/buildtools/eclipse/eclipse-js-workspace"/>
+  <!-- git repository linked to project in workspace -->
+  <property name="eclipse-workrepo" value="/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js"/>
+</target>
+  <target name="clean-site" depends="prepare-site">
+    <delete dir="${eclipse-workrepo}/${site}"/>
+    <mkdir dir="${eclipse-workrepo}/${site}"/>
   </target>
-<target name="build-site" depends="init,prepare">
-  <!-- execute eclipse build, trap log and dump to stdout here -->
-      
+<target name="compile-site" depends="prepare-site,clean-site">
+  <!-- update transpiler -->
+  <copy file="${swingjsdir}/net.sf.j2s.core.jar" todir="${eclipse-inst}/dropins" overwrite="true" failonerror="true"/>
+  <!-- update the git repo linked to the eclipse workspace -->
+  <exec executable="/usr/bin/git" outputproperty="git.commit" failifexecutionfails="true">
+    <arg value="rev-parse" />
+    <arg value="--short" />
+    <arg value="HEAD" />
+  </exec>
+  <!-- update and checkout the same commit in the workspace project -->
+  <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+    <arg value="reset" />
+    <arg value="--hard" />
+  </exec>
+  <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+      <arg value="pull" />
+  </exec>
+  <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+    <arg value="checkout" />
+    <arg value="${git.commit}" />
+  </exec>
+  <!-- custom classpath for .js builds -->
+  <copy file=".classpath.js" tofile="${eclipse-workrepo}/.classpath" overwrite="true"/>
+  <!-- clean eclipse log -->
+  <delete file="${eclipse-work}/.metadata/.log"/>
+    
+  <!-- execute the eclipse build - the build may fail but valid javascript may still be produced, so we ignore return codes -->
+  <exec executable="${eclipse-exec}" failonerror="no">
+    <arg value="-nosplash"/>
+    <arg value="--launcher.suppressErrors"/>
+    <arg value="-application"/>
+    <arg value="org.eclipse.jdt.apt.core.aptBuild"/>
+    <arg value="-data"/>
+    <arg value="${eclipse-work}"/>
+  </exec>
+  <!-- report log -->
+  <exec executable="/bin/cat">
+    <arg value="${eclipse-work}/.metadata/.log"/>
+  </exec>
+  <!-- TODO: run jslint and something else here to check we have a complete set of .js files for java -->
+  <!-- possibly compare timestamps between .js files and their mate in source - any newer or not present triggers a new build -->
   <!-- <mkdir dir="${packageDir}/${site}" /> -->
-  <property name="swingjs.zipurl" value="https://github.com/BobHanson/java2script/blob/master/sources/net.sf.j2s.java.core/dist/SwingJS-site.zip?raw=true" />
-  <property name="swingjs.zip" value="SwingJS-site.zip" />
-  <get src="${swingjs.zipurl}" dest="" usetimestamp="true" />
-  <unzip src="${swingjs.zip}" dest="${packageDir}/${site}/" />
+  <!--   <property name="swingjs.zipurl" value="https://github.com/BobHanson/java2script/blob/master/sources/net.sf.j2s.java.core/dist/SwingJS-site.zip?raw=true" /> -->
+
+  <!-- and reset the .classpath -->
+  <exec executable="/usr/bin/git" failifexecutionfails="true" dir="${eclipse-workrepo}">
+    <arg value="checkout" />
+    <arg value="${git.commit}"/>
+    <arg value="--"/>
+    <arg value=".classpath" />
+  </exec>
+
+  <!-- finally copy artefacts from eclipse project checkout to the build site -->
+  <copy todir="${site}">
+    <fileset dir="${eclipse-workrepo}/site"/>
+  </copy>
 </target>
-  <!-- closure compile -->
+<target name="unzip-to-site" depends="prepare-site">
+  <property name="swingjs.zip" value="${swingjsdir}/SwingJS-site.zip" />
+  <unzip dest="${site}/" overwrite="true">
+    <fileset dir="libjs">
+      <include name="*.zip" />
+    </fileset>
+  </unzip>
+  <copy overwrite="true" todir="${site}/swingjs/j2s/">
+    <fileset dir="${resourceDir}">
+      <include name="**"/>
+    </fileset>
+  </copy>
+
   <!-- copy test files into place in site -->
+  <copy todir="${site}/examples">
+    <fileset dir="examples">
+      <include name="*.*"/>
+    </fileset>
+  </copy>
+  <!-- lastly, update SwingJS -->
+  <unzip dest="${site}/" overwrite="true">
+    <fileset dir="${swingjsdir}">
+      <include name="SwingJS-site.zip"/>
+    </fileset>
+  </unzip>
+</target>
 </project>