X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=4488cbc4c7f89976eab0cb83764a8859a4afaf21;hb=d61781b1fdb2e634445ee02f3718f81673af96ac;hp=b7f1af367a2533b178c561a5f5609c3c485bd042;hpb=20110ea142e56b44a9b42529fd38154c8ae21562;p=jalview.git

diff --git a/build.xml b/build.xml
index b7f1af3..4488cbc 100755
--- a/build.xml
+++ b/build.xml
@@ -20,6 +20,9 @@
 <project name="jalviewX" default="usage" basedir="."
  xmlns:if="ant:if"
     xmlns:unless="ant:unless">
+  <taskdef classpath="${clover.jar}" resource="cloverlib.xml" if:set="clover.jar"/>
+  <clover-env if:set="clover.jar"/>
+
   <target name="help" depends="usage" />
   <target name="usage" depends="init">
     <echo message="~~~Jalview Ant build.xml Usage~~~~" />
@@ -40,6 +43,7 @@
     <echo message="See docs/building.html and the comments in build file for other targets." />
     <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=PathtoJDK/lib which is the lib directory in the JDK install that contains rt.jar " />
     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
+    <echo message="Useful -D flags: -Dclover.jar to specify path to openclover for testng coverage report" />
   </target>
 
 
@@ -130,7 +134,8 @@
     <property name="docDir" value="doc" />
     <property name="sourceDir" value="src" />
     <property name="schemaDir" value="schemas" />
-    <property name="outputDir" value="classes" />
+    <property name="outputDir" value="classes" unless:set="clover.jar"/>
+    <property name="outputDir" value="cloverclasses" if:set="clover.jar"/>
     <property name="packageDir" value="dist" />
     <property name="outputJar" value="jalview.jar" />
     <!-- Jalview Applet JMol Jar Dependency -->
@@ -299,6 +304,7 @@
       verbose="2">
       <classpath>
         <pathelement location="${testOutputDir}" />
+        <pathelement location="${clover.jar}" if:set="clover.jar"/>
         <path refid="test.classpath" />
       </classpath>
       <jvmarg value="--add-modules=java.se.ee" if:set="java9"/>
@@ -540,6 +546,9 @@
 </target>
 
 <target name="makedist" depends="build, buildPropertiesFile, linkcheck, buildindices">
+  <fail if="clover.jar">
+    Ignoring request to build jalview distribution with clover-instrumented classes
+  </fail>
   <!-- make the package jar if not already existing -->
   <mkdir dir="${packageDir}" />
   <!-- clean dir if it already existed -->
@@ -1017,7 +1026,11 @@
   <!-- git repository linked to project in workspace -->
   <property name="eclipse-workrepo" value="/home/bamboo/buildtools/eclipse/eclipse-js-workspace/jalview-js"/>
 </target>
-<target name="compile-site" depends="prepare-site">
+  <target name="clean-site" depends="prepare-site">
+    <delete dir="${eclipse-workrepo}/${site}"/>
+    <mkdir dir="${eclipse-workrepo}/${site}"/>
+  </target>
+<target name="compile-site" depends="prepare-site,clean-site">
   <!-- update transpiler -->
   <copy file="${swingjsdir}/net.sf.j2s.core.jar" todir="${eclipse-inst}/dropins" overwrite="true" failonerror="true"/>
   <!-- update the git repo linked to the eclipse workspace -->
@@ -1040,7 +1053,9 @@
   </exec>
   <!-- custom classpath for .js builds -->
   <copy file=".classpath.js" tofile="${eclipse-workrepo}/.classpath" overwrite="true"/>
-
+  <!-- clean eclipse log -->
+  <delete file="${eclipse-work}/.metadata/.log"/>
+    
   <!-- execute the eclipse build - the build may fail but valid javascript may still be produced, so we ignore return codes -->
   <exec executable="${eclipse-exec}" failonerror="no">
     <arg value="-nosplash"/>
@@ -1050,7 +1065,10 @@
     <arg value="-data"/>
     <arg value="${eclipse-work}"/>
   </exec>
-
+  <!-- report log -->
+  <exec executable="/bin/cat">
+    <arg value="${eclipse-work}/.metadata/.log"/>
+  </exec>
   <!-- TODO: run jslint and something else here to check we have a complete set of .js files for java -->
   <!-- possibly compare timestamps between .js files and their mate in source - any newer or not present triggers a new build -->
   <!-- <mkdir dir="${packageDir}/${site}" /> -->
@@ -1072,11 +1090,6 @@
 <target name="unzip-to-site" depends="prepare-site">
   <property name="swingjs.zip" value="${swingjsdir}/SwingJS-site.zip" />
   <unzip dest="${site}/" overwrite="true">
-    <fileset dir="${swingjsdir}">
-      <include name="SwingJS-site.zip"/>
-    </fileset>
-  </unzip>
-  <unzip dest="${site}/" overwrite="true">
     <fileset dir="libjs">
       <include name="*.zip" />
     </fileset>
@@ -1093,5 +1106,11 @@
       <include name="*.*"/>
     </fileset>
   </copy>
+  <!-- lastly, update SwingJS -->
+  <unzip dest="${site}/" overwrite="true">
+    <fileset dir="${swingjsdir}">
+      <include name="SwingJS-site.zip"/>
+    </fileset>
+  </unzip>
 </target>
 </project>