X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=478e93668cc646498090bd16f1bfa258d3ab39b9;hb=573376fa9bdc28602b0aa2a1f03cc2ebd6b0df7b;hp=3705821a95843d73bba2b6487257629f77624e10;hpb=a19b4b2a4000dbfe90a77b59bfecb10745d2d753;p=jalview.git

diff --git a/build.xml b/build.xml
index 3705821..478e936 100755
--- a/build.xml
+++ b/build.xml
@@ -62,8 +62,12 @@
         <include name="*.jar"/>
       </fileset> -->
       </path>
+  	
     <!-- Jalview Version String displayed by application on startup and used to check for updates -->
     <property name="JALVIEW_VERSION" value="DEVELOPMENT" />
+  	
+    <property name="INSTALLATION" value="Source" />
+  	
     <!-- 2.4 (VAMSAS)" -->
     <!-- Include debugging information in javac true or false -->
     <property name="javac.debug" value="true" />
@@ -113,7 +117,7 @@
     <!-- switch to exclude associations from generated jnlp files -->
     <!-- <property name="nojnlpfileassocs" value="true"/> -->
 
-    <!-- Jalview Web Service Clients - see the comments in 'buildextexcclients' for details -->
+    <!-- Jalview Web Service Clients - see the comments in 'buildextclients' for details -->
     <property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
     <property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
     <property name="wsdl.MsaWS" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS?wsdl" />
@@ -175,8 +179,9 @@
     <properties file="${outputDir}/.build_properties">
       <header>
           ---Jalview Build Details---
-        </header>
+        </header>    	
       <property name="VERSION" value="${JALVIEW_VERSION}" />
+      <property name="INSTALLATION" value="${INSTALLATION}" />
       <property name="BUILD_DATE" value="${build.date}" />
     </properties>
   </target>
@@ -344,9 +349,14 @@
             <include name="*.jar" />
             <include name="*_*.jar" />
             <exclude name="jalview.jar" />
+          	<exclude name="*jnilib.jar"/>
           </fileset>
           <property name="jalview.version" value="${JALVIEW_VERSION}" />
+        	<fileset dir="${packageDir}" os="Mac OS X">
+        		<include name="*quaqua*.jnilib.jar"/>
+        	</fileset>
         </resources>
+      	
         <application_desc main_class="jalview.bin.Jalview">
         </application_desc>
         <security>
@@ -481,7 +491,7 @@
   <mkdir dir="${outputDir}" />
   <javac source="1.5" target="1.5" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" 
 			classpathref="jalviewlite.deps" includes="jalview/appletgui/**"
-			excludes="ext/**,MCview/**,org/**,vamsas/**,jalview/io/**,jalview/ext/paradise/**" />
+			excludes="ext/**,MCview/**,org/**,vamsas/**,jalview/ext/paradise/**" />
 </target>
 
 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">