X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=57cd9d2c55c7731e20704ef1e0466642130ce6d7;hb=a97249105994383dca7ea64259b17ba8ddce31be;hp=b23293f7a1f3f6a69882f6b81b76d7d4d2a6932a;hpb=d3d566fbf876a3511c06fecec695b2f59eb71169;p=jalview.git

diff --git a/build.xml b/build.xml
index b23293f..57cd9d2 100755
--- a/build.xml
+++ b/build.xml
@@ -421,13 +421,11 @@
         </information>
         <resources>
           <j2se version="${j2sev}" initial_heap_size="${inih}" max_heap_size="${maxh}" />
+          <jar main="true" href="jalview.jar"/>
           <fileset dir="${packageDir}">
-            <include name="jalview.jar" />
-          </fileset>
-          <fileset dir="${packageDir}">
+            <exclude name="jalview.jar" />
             <include name="*.jar" />
             <include name="*_*.jar" />
-            <exclude name="jalview.jar" />
             <exclude name="*jnilib.jar" />
           </fileset>
           <property name="jalview.version" value="${JALVIEW_VERSION}" />
@@ -613,7 +611,9 @@
     <pathelement location="appletlib/${jsoup}" />
     <pathelement location="appletlib/${jsonSimple}" />
     <pathelement location="appletlib/${javaJson}" />
-    <pathelement location="appletlib/plugin.jar" />
+ 	<fileset dir="${java.home}/lib">
+        <include name="plugin.jar" />
+    </fileset>
   </path>
   <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />