X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=7d63c5689060e6c5625bf92611bf59a20f2852e0;hb=a789f790fbb3ab13f1967b42781b837b58bf9bbc;hp=a75e4ea32e28ef2f93bf89bbb341acc24d38503c;hpb=b711e6c250e4bcb27ee8c9115bcaf07dadcdfcc2;p=jalview.git

diff --git a/build.xml b/build.xml
index a75e4ea..7d63c56 100755
--- a/build.xml
+++ b/build.xml
@@ -134,8 +134,10 @@
 		</path>
 		<property name="source.dist.name" value="${basedir}/jalview-src.tar.gz" />
 		<!-- The Location of the java 1.1.8 jdk -->
-		<property name="java118.home" value="C:\Sun\jdk1.1.8" />
-		<!--<property name="applet.jre.tools" value="${java118.home}/lib/classes.zip" />
+		<!--<property name="java118.home" value="C:\Sun\jdk1.1.8" />
+		-->
+		<property name="java118.home" value="${java.home}" />
+		    <!--<property name="applet.jre.tools" value="${java118.home}/lib/classes.zip" />
 		--><!-- jre for 1.4 version -->
 		<property name="applet.jre.tools" value="${java.home}/lib/rt.jar"/>
 		
@@ -149,6 +151,8 @@
 			</fileset>
 			<pathelement location="appletlib/${jmolJar}" />
 		</path>
+    <!-- default location for outputting javadoc -->
+    <property name="javadocDir" value="${packageDir}/javadoc"/>
 	</target>
 
 
@@ -169,7 +173,7 @@
 
 	<target name="clean" depends="init">
 		<!-- not efficient yet. -->
-		<delete dir="${outputDir}" />
+		<delete dir="${outputDir}" includes="*,**/*"/>
 	</target>
 
 	<target name="distclean" depends="init, clean">
@@ -448,7 +452,7 @@
 
 
 	<!-- Compile, package and obfuscate Jalview Applet -->
-	<target name="makeApplet" depends="obfuscate" />
+	<target name="makeApplet" depends="obfuscate" description="assemble the final jalviewLite applet jar with or without obfuscation"/>
 
 	<target name="compileApplet" depends="init,clean">
 		<mkdir dir="${outputDir}" />
@@ -474,7 +478,7 @@
 			</fileset>
 		</jar>
 	</target>
-	<target name="obfuscate" depends="-obfuscatefake,-obfuscatereally" description="construct the final jalviewLite applet jar with or without obfuscation">
+	<target name="obfuscate" depends="-obfuscatefake,-obfuscatereally">
 	</target>
 	<target name="-obfuscatefake" depends="packageApplet" if="donotobfuscate">
 		<copy file="in.jar" tofile="${jalviewLiteJar}" overwrite="true" />
@@ -540,6 +544,10 @@
 				<include name="jalview-jalopy.xml" />
 				<include name="JalviewApplet.jpx" />
 				<include name="JalviewX.jpx" />
+				<include name="nbbuild.xml"/>
+				<include name="nbproject/genfiles.properties"/>
+        <include name="nbproject/project.properties"/>
+        <include name="nbproject/project.xml"/>
 				<include name="${sourceDir}/*.java" />
 				<include name="${sourceDir}/**/*.java" />
 				<include name="${sourceDir}/**/*.cdr" />
@@ -557,7 +565,31 @@
 				<include name="${schemaDir}/**/*" />
 				<include name="utils/**/*" />
 				<include name="${docDir}/**/*" />
+				<include name="examples/**/*" />
 			</tarfileset>
 		</tar>
 	</target>
+	<target name="pubapplet" description="installs the jalviewLite applet and dependent jars into an applet examples directory built under ${outputDir}" depends="makeApplet">
+	  <copy todir="${packageDir}/examples">
+	  <fileset dir="examples">
+	  	<include name="**/*"/>
+	  	<include name="javascript/*"/>
+      <include name="jmol/*"/>
+	  </fileset>
+	  	<fileset dir=".">
+	  	<include name="jalviewApplet.jar"/>
+	  		</fileset>
+	  	<fileset dir="appletlib">
+	  	      <include name="**/*"/>
+	  	        </fileset>
+	  </copy>
+	  		
+	</target>
+	<target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
+	 <javadoc destdir="${javadocDir}">
+	 	<packageset dir="${sourceDir}" includes="jalview/*,MCView/*">
+	 	</packageset>
+	 	</javadoc>
+	</target>
+	
 </project>