X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=ab9e3e07e4f99e5e2c65c9df2f19ef1250206508;hb=b9bde68b87a581a1f21e47cb19839791a192134a;hp=3ef3ed3c7bc2013cf85575e11427c8b6de6909b9;hpb=ee326b2a1daf9cf3e62dcb3b703aecc6dfbf098c;p=jalview.git

diff --git a/build.xml b/build.xml
index 3ef3ed3..ab9e3e0 100755
--- a/build.xml
+++ b/build.xml
@@ -20,6 +20,9 @@
 <project name="jalviewX" default="usage" basedir="."
  xmlns:if="ant:if"
     xmlns:unless="ant:unless">
+  <taskdef classpath="${clover.jar}" resource="cloverlib.xml" if:set="clover.jar"/>
+  <clover-env if:set="clover.jar"/>
+
   <target name="help" depends="usage" />
   <target name="usage" depends="init">
     <echo message="~~~Jalview Ant build.xml Usage~~~~" />
@@ -38,8 +41,9 @@
     <echo message="testng - run jalview's tests via testNG. Default group is '${testng-groups}'" />
     <echo message="      you can specify particular test groups as a list via -Dtestng-groups=" />
     <echo message="See docs/building.html and the comments in build file for other targets." />
-    <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=<Path to JDK>/lib which is the lib directory in the JDK install that contains rt.jar " />
+    <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=PathtoJDK/lib which is the lib directory in the JDK install that contains rt.jar " />
     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
+    <echo message="Useful -D flags: -Dclover.jar to specify path to openclover for testng coverage report" />
   </target>
 
 
@@ -102,6 +106,18 @@
     <condition property="java9">
       <equals arg1="${ant.java.version}" arg2="9"/>
     </condition>
+    <!-- Java 10 JVM args -->
+    <condition property="java10">
+      <equals arg1="${ant.java.version}" arg2="10"/>
+    </condition>
+    <!-- Java 11 JVM args -->
+    <condition property="java11">
+      <equals arg1="${ant.java.version}" arg2="11"/>
+    </condition>
+    <echo message="java version is ${ant.java.version}"/>
+    <echo message="java9 is ${java9}"/>
+    <echo message="java10 is ${java10}"/>
+    <echo message="java11 is ${java11}"/>
 
     <!-- Don't change anything below here unless you know what you are doing! -->
     <!-- Url path for WebStart in JNLP file -->
@@ -125,12 +141,14 @@
 
     <!-- build directory configuration -->
     <property name="libDir" value="lib" />
+    <property name="j11libDir" value="j11lib" />
     <property name="resourceDir" value="resources" />
     <property name="helpDir" value="help" />
     <property name="docDir" value="doc" />
     <property name="sourceDir" value="src" />
     <property name="schemaDir" value="schemas" />
-    <property name="outputDir" value="classes" />
+    <property name="outputDir" value="classes" unless:set="clover.jar"/>
+    <property name="outputDir" value="cloverclasses" if:set="clover.jar"/>
     <property name="packageDir" value="dist" />
     <property name="outputJar" value="jalview.jar" />
     <!-- Jalview Applet JMol Jar Dependency -->
@@ -162,6 +180,10 @@
         <include name="*.jar" />
         <include name="**/*.jar" />
       </fileset>
+      <fileset dir="${j11libDir}">
+        <include name="*.jar" />
+        <include name="**/*.jar" />
+      </fileset>
       <fileset dir="${libDir}">
         <include name="*.jar" />
         <include name="**/*.jar" />
@@ -299,6 +321,7 @@
       verbose="2">
       <classpath>
         <pathelement location="${testOutputDir}" />
+        <pathelement location="${clover.jar}" if:set="clover.jar"/>
         <path refid="test.classpath" />
       </classpath>
       <jvmarg value="--add-modules=java.se.ee" if:set="java9"/>
@@ -308,6 +331,13 @@
   </target>
 
   <target name="buildindices" depends="init, prepare" unless="help.uptodate">
+    <replace value="${JALVIEW_VERSION}">
+      <replacetoken><![CDATA[$$Version-Rel$$]]></replacetoken>
+      <fileset dir="${outputDir}/${helpDir}">
+        <include name="help.jhm" />
+      </fileset>
+    </replace>
+
     <java classname="com.sun.java.help.search.Indexer" classpathref="build.classpath" fork="true" dir="${outputDir}/${helpDir}">
       <arg line="html" />
     </java>
@@ -343,10 +373,15 @@
     </jar>
 
     <antcall target="writejnlpf">
-      <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
+      <param name="jnlpFile" value="${packageDir}/jalview_256M.jnlp" />
       <param name="inih" value="10M" />
       <param name="maxh" value="256M" />
     </antcall>
+    <antcall target="writejnlpf">
+      <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
+      <param name="inih" value="800M" />
+      <param name="maxh" value="1024M" />
+    </antcall>
 
     <antcall target="writejnlpf">
       <param name="jnlpFile" value="${packageDir}/jalview_1G.jnlp" />
@@ -356,7 +391,7 @@
 
     <antcall target="writejnlpf">
       <param name="jnlpFile" value="${packageDir}/jalview_2G.jnlp" />
-      <param name="inih" value="256M" />
+      <param name="inih" value="800M" />
       <param name="maxh" value="1024M" />
     </antcall>
 
@@ -383,7 +418,7 @@
         <association mime-type="application-x/ext-file" extensions="jar"/>-->
   </target>
 
-  <target name="-jarsignwithtsa" depends="makedist,preparejnlp" if="timestamp">
+  <target name="-jarsignwithtsa" depends="makedist,preparejnlp" if="timestamp" unless="nosign">
     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}"
       tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
       <fileset dir="${packageDir}">
@@ -391,7 +426,7 @@
       </fileset>
     </signjar>
   </target>
-  <target name="-jarsignnotsa" depends="makedist,preparejnlp" unless="timestamp">
+  <target name="-jarsignnotsa" depends="makedist,preparejnlp" if:blank="timestamp" unless="nosign">
     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="${jalview.keyalg}" digestalg="${jalview.keydig}">
       <fileset dir="${packageDir}">
         <include name="*.jar" />
@@ -459,8 +494,7 @@
     <!-- add the add-modules j2se attribute for java 9 -->
     <replace file="${jnlpFile}" value="j2se version=&quot;1.8+&quot; initial-heap-size=&quot;${inih}&quot; max-heap-size=&quot;${maxh}&quot; java-vm-args=&quot;--add-modules=java.se.ee --illegal-access=warn&quot;">
           <replacetoken>j2se version="1.8+"</replacetoken>
-           
-        </replace>
+    </replace>
   </target>
 
   <target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
@@ -532,6 +566,9 @@
 </target>
 
 <target name="makedist" depends="build, buildPropertiesFile, linkcheck, buildindices">
+  <fail if="clover.jar">
+    Ignoring request to build jalview distribution with clover-instrumented classes
+  </fail>
   <!-- make the package jar if not already existing -->
   <mkdir dir="${packageDir}" />
   <!-- clean dir if it already existed -->
@@ -921,13 +958,13 @@
     <include name="ap_${jsonSimple}" />
   </fileset>
 </target>
-<target name="-signappletnotsa" unless="timestamp" depends="-signapplet">
+<target name="-signappletnotsa" if:blank="timestamp" depends="-signapplet" unless="nosign">
   <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
     <fileset refid="signappletjarset" />
   </signjar>
 </target>
 
-<target name="-signapplettsa" if="timestamp" depends="-signapplet">
+<target name="-signapplettsa" if="timestamp" depends="-signapplet" unless="nosign">
   <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" tsaproxyhost="${proxyHost}" tsaproxyport="${proxyPort}" tsaurl="${jalview.tsaurl}">
     <fileset refid="signappletjarset" />
   </signjar>