X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=b59c410705dd40d7cb7fa2ac49e12270e6cf8e55;hb=51a5402fd1b1616f41c1d1394b2bac12271a462c;hp=a33ed0afd4555fb91010385bb62634079470002d;hpb=0fae337bf20e842f0c688b4ab897ed74c9d1c359;p=vamsas.git

diff --git a/build.xml b/build.xml
index a33ed0a..b59c410 100644
--- a/build.xml
+++ b/build.xml
@@ -3,14 +3,17 @@
 
 	<target name="init">
 		<property name="libDir" value="lib"/>
+		<property name="toolsDir" value="tools"/>
 		<property name="resourceDir" value="resources"/>
 		<property name="sourceDir" value="src" />
 		<property name="outputDir" value="classes" />
 		<property name="packageDir" value="packages" />
-		<property name="vamsas.schema" value="schemas/vamsas15_9.xsd" />
-		<property name="vamsas.schema.package" value="org.vamsas.objects.core" />
+		<property name="vamsasClient.jar" value="vamsas-client.jar" />
+		<property name="vamsas.schema" value="schemas/vamsas.xsd" />
+		<property name="vamsas.doc.schema" value="schemas/vamsasDocument.xsd" />
+		<property name="vamsas.schema.package" value="uk.ac.vamsas.objects.core" />
+		<property name="vamsas.schema.package.src" value="uk/ac/vamsas/objects/core" />
 		<property name="vamsas.schema.sourcegen.properties" value="schemas/castorbuilder.properties"/>
-						
 		<path id="castor.classpath">
 			<fileset dir="tools">
 				<include name="*.jar"/>
@@ -26,7 +29,7 @@
 		Build classpath
 		-->
 		<path id="build.classpath">
-			<fileset dir="utils">
+			<fileset dir="${toolsDir}">
 				<include name="*.jar"/>
 				<include name="**/*.jar"/>
 			</fileset>
@@ -38,18 +41,32 @@
 			<!-- 		path refid="axis.classpath"  -->
 		</path>
 	</target>
-	<target name="makecoresource" depends="init" description="Generate Java source files from XSD.">
+	<target name="cleancoresource" depends="init" description="Clean automatically generated packages">
+		<delete>
+			<fileset dir="${sourceDir}/${vamsas.schema.package.src}">
+				<include name="*.java"/>
+			</fileset>
+		</delete>
+	</target>
+	<target name="makecoresource" depends="init, cleancoresource" description="Generate Java source files from XSD.">
 	<taskdef name="castor-srcgen"
 		  classname="org.exolab.castor.tools.ant.taskdefs.CastorSourceGenTask"
 	      classpathref="castor.classpath" />
-	<castor-srcgen file="${vamsas.schema}"
+	<!-- Should apply this to every schema file in ${vamsas.schemas} directory -->
+		<castor-srcgen file="${vamsas.schema}"
 	      todir="${sourceDir}"
 	      package="${vamsas.schema.package}"
-	      warnings="false" 
+	      warnings="true" 
 		  nodesc="false"
 		properties="${vamsas.schema.sourcegen.properties}"
-	/>
-	
+	/>	
+		<castor-srcgen file="${vamsas.doc.schema}"
+			      todir="${sourceDir}"
+			      package="${vamsas.schema.package}"
+			      warnings="true" 
+				  nodesc="false"
+				properties="${vamsas.schema.sourcegen.properties}"
+			/>	
 	</target>
 	<target name="prepare" depends="init">
 		<mkdir dir="${packageDir}"/>
@@ -92,9 +109,38 @@ inheritRefs="true"/> -->
 
 	<target name="build" depends="init, prepare">
 		<!-- not efficient yet. : use excludes="*/localtest/*.java" if local tests are not building -->
-		<javac classpathref="build.classpath" debug="on" srcdir="${sourceDir}" destdir="${outputDir}" />
+		<javac classpathref="build.classpath" debug="on" srcdir="${sourceDir}" destdir="${outputDir}" deprecation="on" source="1.4" target="1.4">
+	<exclude name="uk/ac/ebi/msd/vamsas/**"/>
+		</javac>
 	</target>
-
+	<target name="jar" depends="build, javadoc">
+		<jar destfile="${packageDir}/${vamsasClient.jar}">
+		<fileset dir="${outputDir}">
+	          <exclude name="cache*/**"/>
+	          <include name="**/*" />
+	          <exclude name="*.jar.*" />
+	          <exclude name="**/*.jar" />
+	          <exclude name="**/*.jar.*" />
+			  <exclude name="*.java"/>
+			  <exclude name="**/*.java"/>
+			  <exclude name="uk/*.class"/>
+			  <exclude name="log4j.properties"/>
+			<exclude name="commons-logging.properties"/>
+		</fileset>
+		</jar>
+	</target>
+	
+	<target name="javadoc" depends="init">
+  	<javadoc destdir="docs/api" author="true" version="true" use="true">  	  
+      <fileset dir="${sourceDir}" defaultexcludes="yes">
+      	<exclude name="**/.castor.cdr"/>
+      	<!-- this was for the old ebi packages.
+      	<exclude name="uk/**"/>
+      	<exclude name="uk/*.java"/> -->
+	    </fileset>
+    </javadoc>
+  </target>
+	
 </project>