X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=b73c9101b64220354d3739b47c2d26e64e15fe61;hb=ad481f48061e9e21dc8db387c09a686f8700e626;hp=c872cfe5f3552c23e1213ca05cdef5ac950a417b;hpb=81c0d443543fea0b28237b6e2bd7973517780030;p=jalview.git

diff --git a/build.xml b/build.xml
index c872cfe..b73c910 100755
--- a/build.xml
+++ b/build.xml
@@ -1,4 +1,21 @@
 <?xml version="1.0"?>
+<!--
+   * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+   * 
+   * This file is part of Jalview.
+   * 
+   * Jalview is free software: you can redistribute it and/or
+   * modify it under the terms of the GNU General Public License 
+   * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+   * 
+   * Jalview is distributed in the hope that it will be useful, but 
+   * WITHOUT ANY WARRANTY; without even the implied warranty 
+   * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+   * PURPOSE.  See the GNU General Public License for more details.
+   * 
+   * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <project name="jalviewX" default="usage" basedir=".">
 	<!-- we use jalopy to format our sources -->
 	<taskdef name="jalopy"
@@ -24,6 +41,7 @@
 		<echo message="makeApplet - compiles, then packages and obfuscates the Applet"/>
 		<echo message="See docs/building.html and the comments in build file for other targets."/>
 	    <echo message="note: compile and makeApplet require the property java118.home to be set to point to a java 1.1.8 jdk."/>
+	    <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation"/>
 	</target>
 
 
@@ -54,7 +72,19 @@
 			</fileset> -->
       </path>
 		<!-- Jalview Version String displayed by application on startup and used to check for updates -->
-      <property name="JALVIEW_VERSION" value="DEVELOPMENT"/>
+    <property name="JALVIEW_VERSION" value="DEVELOPMENT"/> <!-- 2.4 (VAMSAS)" -->
+		<!-- Include debugging information in javac true or false -->
+		<property name="javac.debug" value="true"/>
+		
+		<!-- JarSigner Key Store for Webstart Distribution -->
+		<property name="jalview.keystore" value="./keys/.keystore"/>
+		<!-- Keystore Password -->
+		<property name="jalview.keystore.pass" value="alignmentisfun"/>
+		<!-- Key Name -->
+		<property name="jalview.key" value="jalview"/>
+		<!-- Key Password -->
+		<property name="jalview.key.pass" value="alignmentisfun"/>
+						
 		<!-- Don't change anything below here unless you know what you are doing! -->
 		<!-- Url path for WebStart in JNLP file -->
 		<property name="WebStartLocation" value="http://www.jalview.org/webstart"/>
@@ -68,8 +98,12 @@
 		<property name="outputDir" value="classes" />
 		<property name="packageDir" value="dist" />
 		<property name="outputJar" value="jalview.jar" />
-                <!-- Jalview Applet JMol Jar Dependency -->
-                <property name="jmolJar" value="Jmol-11.0.2.jar" />
+	  <!-- Jalview Applet JMol Jar Dependency -->
+    <property name="jmolJar" value="Jmol-11.0.2.jar" />
+		<property name="jalviewLiteJar" value="jalviewApplet.jar"/>
+		<!-- switch to indicate if we should obfuscate jalviewLite -->
+		<!--<property name="donotobfuscate" value="true"/> -->
+				
 		<!-- Jalview Web Service Clients - see the comments in 'buildextclients' for details -->
 		<property name="wsdl.File" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred?wsdl" />
 		<property name="wsdl.Files" value="http://www.compbio.dundee.ac.uk/JalviewWS/services/vamsas?wsdlFiles" />
@@ -88,7 +122,9 @@
 				<include name="*.jar"/>
 				<include name="**/*.jar"/>
 			</fileset>
+			
 		</path>
+		<property name="source.dist.name" value="${basedir}/jalview-src.tar.gz"/>
 		<!-- The Location of the java 1.1.8 jdk -->
 		<property name="java118.home" value="C:\Sun\jdk1.1.8" />
 		<property name="applet.jre.tools" value="${java118.home}/lib/classes.zip"/>
@@ -162,6 +198,7 @@
 		<javac source="1.4" target="1.4"
         srcdir ="${sourceDir}"
         destdir="${outputDir}"
+				debug="${javac.debug}"
       classpathref="build.classpath">
 			<exclude name="jalview/*applet*"/>
 			<exclude name="com/stevesoft/**"/>
@@ -182,10 +219,10 @@
 	<target name="makefulldist" depends="makedist">
 		<!-- the default keystore details might need to be edited here -->
 		<signjar
-      storepass="alignmentisfun"
-      keypass="alignmentisfun"
-      keystore="keys/.keystore"
-      alias="jalview"
+      storepass="${jalview.keystore.pass}"
+      keypass="${jalview.key.pass}"
+      keystore="${jalview.keystore}"
+      alias="${jalview.key}"
       lazy="false"
       verbose="false"
       >
@@ -197,7 +234,8 @@
 		<taskdef classpathref="build.classpath" resource="com/roxes/tools/ant/taskdefs.properties"/>
 
 		<!--    codebase="http://www.jalview.org/jalview/webstart" -->
-		<jnlp toFile="${packageDir}/jalview.jnlp" href="jalview.jnlp"
+		<!-- href="jalview.jnlp" prevent hard-wired pickup of jnlp in certain javaws versions -->
+		<jnlp toFile="${packageDir}/jalview.jnlp" 
       codebase="${WebStartLocation}">
 			<information>
 				<title>Jalview</title>
@@ -216,6 +254,7 @@
         <association mime-type="application-x/ext-file" extensions="pfam"/>
         <association mime-type="application-x/ext-file" extensions="aln"/>
         <association mime-type="application-x/ext-file" extensions="pir"/>
+        <association mime-type="application-x/ext-file" extensions="amsa"/>
 	-->
 			</information>
 			<resources>
@@ -225,6 +264,7 @@
 				</fileset>
 				<fileset dir="${packageDir}">
 					<include name="*.jar"/>
+					<include name="*_*.jar"/>
 					<exclude name="jalview.jar"/>
 				</fileset>
 				<property name="jalview.version" value="${JALVIEW_VERSION}"/>
@@ -352,6 +392,7 @@
     target="1.1"
     srcdir="${sourceDir}" 
     destdir="${outputDir}"
+   	debug="${javac.debug}"
     classpath="lib/${jmolJar}"
        includes="jalview/appletgui/**"
        excludes="ext/**,MCview/**,org/**,vamsas/**"
@@ -375,16 +416,23 @@
         </fileset>
       </jar>
   </target>
-
-  <target name="obfuscate" depends="packageApplet">
-    <path id="obfuscateDeps.path">
+  <target name="obfuscate" depends="-obfuscatefake,-obfuscatereally" description="construct the final jalviewLite applet jar with or without obfuscation">
+  </target>
+	<target name="-obfuscatefake" depends="packageApplet" if="donotobfuscate">    
+  	<copy file="in.jar" tofile="${jalviewLiteJar}" />    	
+    <delete file="in.jar"/>
+  </target>
+	<target name="-obfuscatereally" unless="donotobfuscate">
+    
+  	<path id="obfuscateDeps.path">
     <pathelement location="${applet.jre.tools}"/>
     <pathelement location="lib/${jmolJar}"/>
     </path>
     <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+  	
     <proguard>
       <injar file="in.jar"/>
-      <outjar file="jalviewApplet.jar"/>
+      <outjar file="${jalviewLiteJar}"/>
       <libraryjar refid="obfuscateDeps.path"/>
       <keep access="public" type="class"
       name="jalview.bin.JalviewLite">
@@ -396,9 +444,8 @@
       -injars      in.jar
       -outjars     jalviewApplet.jar
       -keep public class jalview.bin.JalviewLite
-       { public * ; }
-       -->
-    </proguard>
+       { public * ; } -->
+      </proguard>
     <delete file="in.jar"/>
   </target>
 
@@ -470,4 +517,33 @@
 						properties="${schemaDir}/jalview.nodesc.properties"
 	/>
 	</target>
+	<target name="sourcedist" description="create jalview source distribution" depends="init">
+		<delete file="${source.dist.name}"/>
+		<tar destfile="${source.dist.name}" compression="gzip">
+			<tarfileset dir="./" prefix="jalview" preserveLeadingSlashes="true">
+				<include name="LICENSE"/>
+				<include name="README"/>
+				<include name="build.xml"/>
+				<include name="jalview-jalopy.xml"/>
+				<include name="JalviewApplet.jpx"/>
+				<include name="JalviewX.jpx"/>
+				<include name="${sourceDir}/*.java"/>
+				<include name="${sourceDir}/**/*.java"/>
+				<include name="${sourceDir}/**/*.cdr"/>
+				<include name="${libDir}/**/*"/>						
+				<include name="${resourceDir}/**/*"/>						
+				<include name="${helpDir}/**/*"/>						
+				<exclude name="**/*locales"/>
+				<exclude name="*locales/**"/>
+				<exclude name="utils/InstallAnywhere/**Build.iap_xml"/>
+				<exclude name="utils/InstallAnywhere/**Build*/**"/>
+				<exclude name="utils/InstallAnywhere/**Build*/**"/>
+				<exclude name="utils/InstallAnywhere/**locale*"/>
+				<exclude name="utils/InstallAnywhere/**locale*/**"/>
+				<include name="${schemaDir}/**/*"/>						
+				<include name="utils/**/*"/>
+				<include name="${docDir}/**/*"/>						
+			</tarfileset>
+		</tar>
+	</target>
 </project>