X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=bed6d684437c5a7c9858d2ca19af96bb388b3b52;hb=5f7330e5fb8a2c16ff6543bc492cce458fb8274f;hp=97f459d3be87fd28f9b5a30872c782fd0186f48c;hpb=cf7336a4d64f799b6f6362622d740693e251bf9a;p=jalview.git

diff --git a/build.xml b/build.xml
index 97f459d..bed6d68 100755
--- a/build.xml
+++ b/build.xml
@@ -43,6 +43,7 @@
     <echo message="See docs/building.html and the comments in build file for other targets." />
     <echo message="note: compile and makeApplet optionally compile/obfuscate applet against a different Java version by specifying -Djava118.home=PathtoJDK/lib which is the lib directory in the JDK install that contains rt.jar " />
     <echo message="Useful -D flags: -Ddonotobfuscate will prevent applet obfuscation" />
+    <echo message="Useful -D flags: -Dclover.jar to specify path to openclover for testng coverage report" />
   </target>
 
 
@@ -355,10 +356,15 @@
     </jar>
 
     <antcall target="writejnlpf">
-      <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
+      <param name="jnlpFile" value="${packageDir}/jalview_256M.jnlp" />
       <param name="inih" value="10M" />
       <param name="maxh" value="256M" />
     </antcall>
+    <antcall target="writejnlpf">
+      <param name="jnlpFile" value="${packageDir}/jalview.jnlp" />
+      <param name="inih" value="800M" />
+      <param name="maxh" value="1024M" />
+    </antcall>
 
     <antcall target="writejnlpf">
       <param name="jnlpFile" value="${packageDir}/jalview_1G.jnlp" />
@@ -368,7 +374,7 @@
 
     <antcall target="writejnlpf">
       <param name="jnlpFile" value="${packageDir}/jalview_2G.jnlp" />
-      <param name="inih" value="256M" />
+      <param name="inih" value="800M" />
       <param name="maxh" value="1024M" />
     </antcall>
 
@@ -471,8 +477,7 @@
     <!-- add the add-modules j2se attribute for java 9 -->
     <replace file="${jnlpFile}" value="j2se version=&quot;1.8+&quot; initial-heap-size=&quot;${inih}&quot; max-heap-size=&quot;${maxh}&quot; java-vm-args=&quot;--add-modules=java.se.ee --illegal-access=warn&quot;">
           <replacetoken>j2se version="1.8+"</replacetoken>
-           
-        </replace>
+    </replace>
   </target>
 
   <target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
@@ -694,6 +699,50 @@
   <delete file="in.jar" />
 </target>
 
+<target name="jaxb-bindings" depends="init" description="Generates JAXB bindings for supported Jalview XML models (needs xjc on the path)">
+  <delete>
+    <fileset dir="${sourceDir}/jalview/xml/binding/jalview">
+      <include name="*.java" />
+    </fileset>
+  </delete>
+  <exec executable="xjc">
+    <arg value="${schemaDir}/jalview.xsd"/>
+    <arg value="-d"/>
+    <arg value="${sourceDir}"/>
+    <arg value="-p"/>
+    <arg value="jalview.xml.binding.jalview"/>
+  </exec>
+  <delete>
+    <fileset dir="${sourceDir}/jalview/xml/binding/embl">
+      <include name="*.java" />
+    </fileset>
+  </delete>
+
+  <exec executable="xjc">
+    <arg value="${schemaDir}/embl.xsd"/>
+    <arg value="-d"/>
+    <arg value="${sourceDir}"/>
+    <arg value="-b"/>
+    <arg value="${schemaDir}/embl_bindings.xml"/>
+    <arg value="-p"/>
+    <arg value="jalview.xml.binding.embl"/>
+  </exec>
+
+  <delete>
+    <fileset dir="${sourceDir}/jalview/xml/binding/uniprot">
+      <include name="*.java" />
+    </fileset>
+  </delete>
+
+  <exec executable="xjc">
+    <arg value="${schemaDir}/uniprot.xsd"/>
+    <arg value="-d"/>
+    <arg value="${sourceDir}"/>
+    <arg value="-p"/>
+    <arg value="jalview.xml.binding.uniprot"/>
+  </exec>
+</target>
+
 <target name="castorbinding" depends="init" description="Generate Java bindings to supported Jalview XML models.">
   <taskdef name="castor-srcgen" classname="org.castor.anttask.CastorCodeGenTask" classpathref="build.classpath" />
   <delete>