X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=c29f2c1aef963f01b59e76ea4405fb6d4242955e;hb=17d3ea2201aefcedab0ed6513cbd420f87f8b999;hp=2673e9bf89c3b3359ab72ffe96ed58696cc7684b;hpb=5e9c9db95281199bdb29f5716a231283d9e0384c;p=jalview.git

diff --git a/build.xml b/build.xml
index 2673e9b..c29f2c1 100755
--- a/build.xml
+++ b/build.xml
@@ -85,6 +85,8 @@
 		<!-- Key Password -->
 		<property name="jalview.key.pass" value="alignmentisfun" />
 
+		    
+		    
 		<!-- Don't change anything below here unless you know what you are doing! -->
 		<!-- Url path for WebStart in JNLP file -->
 		<property name="WebStartLocation" value="http://www.jalview.org/webstart" />
@@ -92,6 +94,12 @@
 		<property name="WebStartImage" value="JalviewLogo_big.png"/>
 		<!-- J2SE version needed for webstart launch -->
 		<property name="j2sev" value="1.6+"/>
+
+    <!-- Permissions for running Java applets and applications. Defaults are those suitable for deploying jalview webstart/jalviewLite at www.jalview.org -->
+    <property name="application.codebase" value="*.jalview.org"/>
+    <property name="applet.codebase" value="*.jalview.org"/>
+    <property name="applet.caller-codebase" value="${applet.codebase}"/>
+
 		<!-- build directory configuration -->
 		<property name="libDir" value="lib" />
 		<property name="resourceDir" value="resources" />
@@ -228,7 +236,7 @@
 
 	<target name="makefulldist" depends="makedist">
 		<!-- the default keystore details might need to be edited here -->
-		<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
+		<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="SHA1withRSA">
 
 			<fileset dir="${packageDir}">
 				<include name="*.jar" />
@@ -418,7 +426,7 @@
         <attribute name="Permissions" value="all-permissions" />
         <!--<attribute name="Trusted-Lib" value="true" /> -->
         <attribute name="Application-Name" value="Jalview Desktop"/>
-        <attribute name="Codebase" value="*"/>
+        <attribute name="Codebase" value="${application.codebase}"/>
 			</manifest>
 			<fileset dir="${outputDir}/">
 				<exclude name="cache*/**" />
@@ -467,10 +475,11 @@
 		<jar destfile="in.jar" index="true">
 			<manifest>
 				<attribute name="Main-Class" value="jalview.bin.JalviewLite" />
-			  	<attribute name="Permissions" value="sandbox" /> 
-        <!--<attribute name="Trusted-Lib" value="true" /> -->
 				<attribute name="Application-Name" value="JalviewLite Applet"/>
-				<attribute name="Codebase" value="www.jalview.org"/>
+				<!--        	<attribute name="Permissions" value="sandbox" /> -->
+				<!--<attribute name="Trusted-Lib" value="true" /> -->
+				<attribute name="Codebase" value="${applet.codebase}"/>
+				<attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}"/>
 			</manifest>
 			<fileset dir="${outputDir}">
 				<include name="com/**" />
@@ -500,11 +509,17 @@
 			<injar file="in.jar" />
 			<outjar file="${jalviewLiteJar}" />
 			<libraryjar refid="obfuscateDeps.path" />
+			<dontwarn/>
 			<keep access="public" type="class" name="jalview.bin.JalviewLite">
 				<field access="public" />
 				<method access="public" />
 				<constructor access="public" />
 			</keep>
+			<keep access="public" type="class" name="jalview.appletgui.AlignFrame">
+				<field access="public" />
+				<method access="public" />
+				<constructor access="public" />
+			</keep>
 			<!--      -libraryjars "${obfuscateDeps}"
       -injars      in.jar
       -outjars     jalviewApplet.jar
@@ -588,7 +603,15 @@
 	  	        </fileset>
 	  </copy>
 	    <jar update="true" index="true" jarfile="${packageDir}/examples/${jalviewLiteJar}"/>
-	    <jar update="true" index="true" jarfile="${packageDir}/examples/$(jmolJar}"/>
+	    <jar update="true" index="true" jarfile="${packageDir}/examples/${jmolJar}">
+	    	<manifest>
+	        <attribute name="Application-Name" value="Jmol (bundled with JalviewLite)"/>
+	        <!--          <attribute name="Permissions" value="sandbox" /> -->
+	        <!--<attribute name="Trusted-Lib" value="true" /> -->
+	        <attribute name="Codebase" value="${applet.codebase}"/>
+	        <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}"/>
+	    	  </manifest>
+	    	</jar>
     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
 
       <fileset dir="${packageDir}/examples">