X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=d636a42a6db63b3176ec43fc2b5811df96824fec;hb=af65be61ff37a024b694150efed2c6c9b81382ef;hp=3c183089e467d61c692a3e98b287df6f59f553d5;hpb=2681593fa6810815547b688b89424c837cac1240;p=jalview.git

diff --git a/build.xml b/build.xml
index 3c18308..d636a42 100755
--- a/build.xml
+++ b/build.xml
@@ -17,7 +17,9 @@
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
 -->
-<project name="jalviewX" default="usage" basedir=".">
+<project name="jalviewX" default="usage" basedir="."
+ xmlns:if="ant:if"
+    xmlns:unless="ant:unless">
   <target name="help" depends="usage" />
   <target name="usage" depends="init">
     <echo message="~~~Jalview Ant build.xml Usage~~~~" />
@@ -96,6 +98,10 @@
 
     <!-- default TestNG groups to run -->
     <property name="testng-groups" value="Functional" />
+    <!-- Java 9 JVM args -->
+    <condition property="java9">
+      <equals arg1="${ant.java.version}" arg2="9"/>
+    </condition>
 
     <!-- Don't change anything below here unless you know what you are doing! -->
     <!-- Url path for WebStart in JNLP file -->
@@ -106,8 +112,8 @@
     <!-- Anne's version needs 1.7 - should rebuild VARNA to java 1.6 for release -->
     <property name="j2sev" value="1.7+" />
     <!-- Java Compilation settings - source and target javac version -->
-    <property name="javac.source" value="1.7" />
-    <property name="javac.target" value="1.7" />
+    <property name="javac.source" value="1.8" />
+    <property name="javac.target" value="1.8" />
 
     <!-- Permissions for running Java applets and applications. -->
     <!-- Defaults are those suitable for deploying jalview webstart www.jalview.org -->
@@ -298,6 +304,8 @@
         <pathelement location="${testOutputDir}" />
         <path refid="test.classpath" />
       </classpath>
+      <jvmarg value="--add-modules=java.se.ee" if:set="java9"/>
+      <jvmarg value="--illegal-access=warn" if:set="java9"/>
       <classfileset dir="${testOutputDir}" includes="**/*.class" />
     </testng>
   </target>
@@ -425,19 +433,20 @@
           <offline_allowed />
         </information>
         <resources>
-          <j2se version="${j2sev}" initial_heap_size="${inih}" max_heap_size="${maxh}" />
+          <j2se version="1.8+" />
           <jar main="true" href="jalview.jar"/>
           <fileset dir="${packageDir}">
             <exclude name="jalview.jar" />
             <include name="*.jar" />
             <include name="*_*.jar" />
-            <exclude name="*jnilib.jar" />
+            <exclude name="*quaqua*.jar" />
           </fileset>
           <property name="jalview.version" value="${JALVIEW_VERSION}" />
         </resources>
         <resources os="Mac OS X">
           <fileset dir="${packageDir}">
-            <include name="*quaqua*.jnilib.jar" />
+          	 <include name="quaqua-filechooser-only-8.0.jar"/>
+            <include name="*quaqua64*.jnilib.jar" />
           </fileset>
         </resources>
 
@@ -450,7 +459,10 @@
     </presetdef>
 
     <jnlpf toFile="${jnlpFile}" />
-
+    <!-- add the add-modules j2se attribute for java 9 -->
+    <replace file="${jnlpFile}" value="j2se version=&quot;1.8+&quot; initial-heap-size=&quot;${inih}&quot; max-heap-size=&quot;${maxh}&quot; java-vm-args=&quot;--add-modules=java.se.ee --illegal-access=warn&quot;">
+          <replacetoken>j2se version="1.8+"</replacetoken>
+    </replace>
   </target>
 
   <target name="-dofakejnlpfileassoc" depends="-generatejnlpf" if="nojnlpfileassocs">
@@ -577,7 +589,6 @@
 </target>
 
 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
-  <copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif" />
   <copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
   <copy todir="${outputDir}/lang">
     <fileset dir="${resourceDir}/lang">
@@ -595,7 +606,6 @@
       <include name="MCview/**" />
       <include name="jalview/**" />
       <include name=".build_properties" />
-      <include name="images/idwidth.gif" />
       <include name="images/link.gif" />
       <include name="lang/**" />
     </fileset>
@@ -620,7 +630,7 @@
       <include name="plugin.jar" />
     </fileset>
   </path>
-  <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard.jar" />
+  <taskdef resource="proguard/ant/task.properties" classpath="utils/proguard_5.3.3.jar" />
 
   <proguard verbose="true" >
     <injar file="in.jar" />
@@ -700,6 +710,10 @@
   <!-- temporary copy of source to update timestamps -->
   <copy todir="_sourcedist">
     <fileset dir=".">
+      <exclude name=".*" />
+      <exclude name="**/.*" />
+      <exclude name="*.class" />
+      <exclude name="**/*.class" />
       <include name="LICENSE" />
       <include name="README" />
       <include name="build.xml" />
@@ -724,8 +738,10 @@
       <exclude name="utils/InstallAnywhere/**Build.iap_xml" />
       <exclude name="utils/InstallAnywhere/**Build*/**" />
       <exclude name="utils/InstallAnywhere/**Build*/**" />
+      <exclude name="utils/InstallAnywhere/.build*.*/**" />
       <exclude name="utils/InstallAnywhere/**locale*" />
       <exclude name="utils/InstallAnywhere/**locale*/**" />
+      <exclude name="utils/InstallAnywhere/**locale*/**" />
       <include name="${schemaDir}/**/*" />
       <include name="utils/**/*" />
       <include name="${docDir}/**/*" />