X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=d8f12e094007f01b33086034ee34a430b54ee1d0;hb=refs%2Fheads%2Ffeature%2FJAL-2553ensemblGenomes;hp=7feacfb77b17fec1957f58172d1f38c7e1ada43f;hpb=07f9d0ec428f22b9df1da4e3ad68d7c4f99961bf;p=jalview.git

diff --git a/build.xml b/build.xml
index 7feacfb..d8f12e0 100755
--- a/build.xml
+++ b/build.xml
@@ -302,7 +302,7 @@
     </testng>
   </target>
 
-  <target name="buildindices" depends="init, prepare,linkcheck" unless="help.uptodate">
+  <target name="buildindices" depends="init, prepare" unless="help.uptodate">
     <java classname="com.sun.java.help.search.Indexer" classpathref="build.classpath" fork="true" dir="${outputDir}/${helpDir}">
       <arg line="html" />
     </java>
@@ -521,7 +521,7 @@
   </axis-wsdl2java>
 </target>
 
-<target name="makedist" depends="build, buildPropertiesFile, buildindices">
+<target name="makedist" depends="build, buildPropertiesFile, linkcheck, buildindices">
   <!-- make the package jar if not already existing -->
   <mkdir dir="${packageDir}" />
   <!-- clean dir if it already existed -->
@@ -573,7 +573,7 @@
 
 <target name="compileApplet" depends="init,clean">
   <mkdir dir="${outputDir}" />
-  <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**,jalview/ext/ensembl/**,jalview/ext/so" />
+  <javac source="${javac.source}" target="${javac.target}" srcdir="${sourceDir}" destdir="${outputDir}" debug="${javac.debug}" classpathref="jalviewlite.deps" includes="jalview/appletgui/**" excludes="ext/**,gui/**,jbgui/**,MCview/**,org/**,vamsas/**,jalview/ext/rbvi/**,jalview/ext/paradise/**,jalview/ext/ensembl/**,jalview/ext/so/**" />
 </target>
 
 <target name="packageApplet" depends="compileApplet, buildPropertiesFile">
@@ -926,8 +926,7 @@
     </packageset>
   </javadoc>
 </target>
-<target name="linkcheck">
-  <!-- finally, publish the help files -->
+<target name="linkcheck" depends="init,prepare">
   <javac srcdir="utils" destdir="utils" includes="HelpLinksChecker.java"/>
   <java fork="true" dir="${helpDir}" classpath="utils" classname="HelpLinksChecker" failonerror="true">
     <arg file="${helpDir}"/>