X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=e55fe2699a4cfd7daf0dd13f5fd33055a9e63a72;hb=6e7c57d5517ac34d6c3adeec3683aed0b667f9d1;hp=3eae6af3fd4d087af6b75768379f134fa198aaae;hpb=e1a4dac21b9e7fb59d123bf3fa4e0f4f594c7f76;p=jalview.git

diff --git a/build.xml b/build.xml
index 3eae6af..e55fe26 100755
--- a/build.xml
+++ b/build.xml
@@ -412,7 +412,7 @@
 				<include name="*.jar"/>
 			</fileset>
 		</delete>
-		<jar destfile="${packageDir}/${outputJar}">
+		<jar destfile="${packageDir}/${outputJar}" index="true">
 			<manifest>
 				<attribute name="Main-Class" value="jalview.bin.Jalview" />
         <attribute name="Permissions" value="all-permissions" />
@@ -464,9 +464,13 @@
 	<target name="packageApplet" depends="compileApplet, buildPropertiesFile">
 		<copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif" />
 		<copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
-		<jar destfile="in.jar">
+		<jar destfile="in.jar" index="true">
 			<manifest>
 				<attribute name="Main-Class" value="jalview.bin.JalviewLite" />
+			  <!--				<attribute name="Permissions" value="sandbox" /> -->
+        <!--<attribute name="Trusted-Lib" value="true" /> -->
+				<attribute name="Application-Name" value="JalviewLite Applet"/>
+				<attribute name="Codebase" value="www.jalview.org"/>
 			</manifest>
 			<fileset dir="${outputDir}">
 				<include name="com/**" />
@@ -583,7 +587,14 @@
 	  	      <include name="**/*"/>
 	  	        </fileset>
 	  </copy>
-	  		
+	    <jar update="true" index="true" jarfile="${packageDir}/examples/${jalviewLiteJar}"/>
+	    <jar update="true" index="true" jarfile="${packageDir}/examples/$(jmolJar}"/>
+    <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
+
+      <fileset dir="${packageDir}/examples">
+        <include name="*.jar" />
+      </fileset>
+    </signjar>
 	</target>
 	<target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
 	 <javadoc destdir="${javadocDir}">