X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=e7f05bc982b9e5930fd6308f05f3011b2b5f42aa;hb=1ac48a3ee02288fe52f16f9637bbaa099594fe4b;hp=95c855ad9a220964a215b307ae3811ab682e8f02;hpb=7dd17e89f1507a5e445425331c56efca6062e03c;p=jalview.git

diff --git a/build.xml b/build.xml
index 95c855a..e7f05bc 100755
--- a/build.xml
+++ b/build.xml
@@ -85,6 +85,8 @@
 		<!-- Key Password -->
 		<property name="jalview.key.pass" value="alignmentisfun" />
 
+		    
+		    
 		<!-- Don't change anything below here unless you know what you are doing! -->
 		<!-- Url path for WebStart in JNLP file -->
 		<property name="WebStartLocation" value="http://www.jalview.org/webstart" />
@@ -92,6 +94,12 @@
 		<property name="WebStartImage" value="JalviewLogo_big.png"/>
 		<!-- J2SE version needed for webstart launch -->
 		<property name="j2sev" value="1.6+"/>
+
+    <!-- Permissions for running Java applets and applications. Defaults are those suitable for deploying jalview webstart/jalviewLite at www.jalview.org -->
+    <property name="application.codebase" value="*.jalview.org"/>
+    <property name="applet.codebase" value="*"/>
+    <property name="applet.caller-codebase" value="${applet.codebase}"/>
+
 		<!-- build directory configuration -->
 		<property name="libDir" value="lib" />
 		<property name="resourceDir" value="resources" />
@@ -228,7 +236,7 @@
 
 	<target name="makefulldist" depends="makedist">
 		<!-- the default keystore details might need to be edited here -->
-		<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
+		<signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="SHA1withRSA">
 
 			<fileset dir="${packageDir}">
 				<include name="*.jar" />
@@ -412,13 +420,12 @@
 				<include name="*.jar"/>
 			</fileset>
 		</delete>
-		<jar destfile="${packageDir}/${outputJar}">
+		<jar destfile="${packageDir}/${outputJar}" index="true">
 			<manifest>
 				<attribute name="Main-Class" value="jalview.bin.Jalview" />
         <attribute name="Permissions" value="all-permissions" />
-        <!--<attribute name="Trusted-Lib" value="true" /> -->
         <attribute name="Application-Name" value="Jalview Desktop"/>
-        <attribute name="Codebase" value="*"/>
+        <attribute name="Codebase" value="${application.codebase}"/>
 			</manifest>
 			<fileset dir="${outputDir}/">
 				<exclude name="cache*/**" />
@@ -464,13 +471,12 @@
 	<target name="packageApplet" depends="compileApplet, buildPropertiesFile">
 		<copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif" />
 		<copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
-		<jar destfile="in.jar">
+		<jar destfile="in.jar" index="true">
 			<manifest>
 				<attribute name="Main-Class" value="jalview.bin.JalviewLite" />
-			  <!--				<attribute name="Permissions" value="sandbox" /> -->
-        <!--<attribute name="Trusted-Lib" value="true" /> -->
-				<attribute name="Application-Name" value="JalviewLite Applet"/>
-				<attribute name="Codebase" value="*"/>
+				<attribute name="Application-Name" value="JalviewLite"/>
+        			<attribute name="Permissions" value="all-permissions" />
+				<attribute name="Codebase" value="${applet.codebase}"/>
 			</manifest>
 			<fileset dir="${outputDir}">
 				<include name="com/**" />
@@ -500,11 +506,17 @@
 			<injar file="in.jar" />
 			<outjar file="${jalviewLiteJar}" />
 			<libraryjar refid="obfuscateDeps.path" />
+			<dontwarn/>
 			<keep access="public" type="class" name="jalview.bin.JalviewLite">
 				<field access="public" />
 				<method access="public" />
 				<constructor access="public" />
 			</keep>
+			<keep access="public" type="class" name="jalview.appletgui.AlignFrame">
+				<field access="public" />
+				<method access="public" />
+				<constructor access="public" />
+			</keep>
 			<!--      -libraryjars "${obfuscateDeps}"
       -injars      in.jar
       -outjars     jalviewApplet.jar
@@ -581,14 +593,48 @@
       <include name="jmol/*"/>
 	  </fileset>
 	  	<fileset dir=".">
-	  	<include name="jalviewApplet.jar"/>
+	  	<include name="${jalviewLiteJar}"/>
 	  		</fileset>
 	  	<fileset dir="appletlib">
 	  	      <include name="**/*"/>
 	  	        </fileset>
 	  </copy>
-	    <jar update="true" index="true" jarfile="${packageDir}/examples/${jalviewLiteJar}"/>
-	    <jar update="true" index="true" jarfile="${packageDir}/examples/$(jmolJar}"/>
+	  <presetdef name="applet.jar">
+	    <jar update="true" index="true">
+	    	<manifest>
+	        <attribute name="Application-Name" value="JalviewLite"/>
+     		<attribute name="Permissions" value="all-permissions"/>
+		<attribute name="Codebase" value="${applet.codebase}"/>
+		<attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}"/>
+		<attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}"/>
+		<!--
+		<attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}"/>
+		-->
+<!--		<attribute name="Trusted-Only" value="true"/>
+-->
+<!-- 		<attribute name="Trusted-Library" value="true"/>
+-->
+		</manifest>
+	  </jar>
+	  </presetdef>
+	  <presetdef name="applet_tl.jar">
+	    <jar update="true" index="true" jarfile="@{jarfile}">
+	    	<manifest>
+	        <attribute name="Application-Name" value="JalviewLite"/>
+     		<attribute name="Permissions" value="all-permissions" />
+		<attribute name="Codebase" value="${applet.codebase}"/>
+		<attribute name="Trusted-Only" value="true"/>
+ 		<attribute name="Trusted-Library" value="true"/>
+		</manifest>
+	  </jar>
+
+	  </presetdef>
+	  <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/tl_${jalviewLiteJar}"/>
+	  <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/tl_${jmolJar}"/>
+	  <applet.jar jarfile="${packageDir}/examples/${jalviewLiteJar}"/>
+	  <applet_tl.jar jarfile="${packageDir}/examples/tl_${jalviewLiteJar}"/>
+	  <applet.jar jarfile="${packageDir}/examples/${jmolJar}"/>
+	  <applet_tl.jar jarfile="${packageDir}/examples/tl_${jmolJar}"/>
     <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
 
       <fileset dir="${packageDir}/examples">