X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2FExecutable.properties;h=7471956543cdcd7304e68d883957cea4dbcb37bf;hb=35947b9e0b6ae1be74f17d15cd6a65ceadc6d310;hp=4ce8e13acce7fabeb5bb9f6dba9785cc2a096d74;hpb=cfeb0f2ed902dac482a1e1d113e19c7dd6d6b247;p=jabaws.git

diff --git a/conf/Executable.properties b/conf/Executable.properties
index 4ce8e13..7471956 100644
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -48,7 +48,7 @@
 # iupred, jronn, globplot, disembl, aacon]
 
 
-####            Parameters specific to the JAVA Jar executables.        #### 
+###  Parameters specific to the JAVA Jar executables.      ### 
 
 ## Parameter supported by the executable Jar files, such as jronn and aacon, 
 ## point to the location of the jar file. Also, local.<execname>.bin, 
@@ -72,6 +72,17 @@ clustalw.parameters.file=conf/settings/ClustalParameters.xml
 #clustalw.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M
 
 
+######                 CLUSTAL OMEGA CONFIGURATION                ######
+local.clustalo.bin.windows=binaries/windows/clustalo/clustalo.exe
+local.clustalo.bin=binaries/src/clustalo/clustalo
+#cluster.clustalo.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/clustalo/clustalo
+## This parameters specifies the directory where the matrices files are stored   
+clustalo.presets.file=conf/settings/ClustalPresets.xml
+clustalo.parameters.file=conf/settings/ClustalParameters.xml
+#clustalo.limits.file=conf/settings/ClustalLimits.xml
+#clustalo.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M
+
+
 ######                 MUSCLE CONFIGURATION                 ######
 local.muscle.bin.windows=binaries/windows/muscle.exe
 local.muscle.bin=binaries/src/muscle/muscle