X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2FExecutable.properties;h=7864ebf52c1b1848ac7fc557cc034db0a9f5f901;hb=ff4eb72e1d1a381dc9317c80fcc1b92fc1c68d17;hp=5433d777e92c1c5c26eb2c87f8f95ef8c720662a;hpb=e91343b74bb3c0b6ec3f792a08f2e981d7c50ad0;p=jabaws.git

diff --git a/conf/Executable.properties b/conf/Executable.properties
index 5433d77..7864ebf 100644
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -72,6 +72,21 @@ clustalw.parameters.file=conf/settings/ClustalParameters.xml
 #clustalw.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M
 
 
+######                 CLUSTAL OMEGA CONFIGURATION                ######
+local.clustalo.bin.windows=binaries/windows/clustalo/clustalo.exe
+local.clustalo.bin=binaries/src/clustalo/src/clustalo
+cluster.clustalo.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/clustalo/src/clustalo
+## This parameters specifies the directory where the matrices files are stored   
+#clustalo.presets.file=conf/settings/ClustaloPresets.xml
+clustalo.parameters.file=conf/settings/ClustaloParameters.xml
+clustalo.limits.file=conf/settings/ClustaloLimits.xml
+## ClustalO can be executed on multiple CPUs if run on the cluster. 
+## This parameter specifies the number of CPUs to use
+clustalo.cluster.cpunum=4
+## This reserves a slot with CPUNUM on the cluster for the task
+clustalo.cluster.settings=-q 64bit-pri.q -pe smp 4 -l h_vmem=1700M -l ram=1700M -l h_cpu=24:00:00  
+
+
 ######                 MUSCLE CONFIGURATION                 ######
 local.muscle.bin.windows=binaries/windows/muscle.exe
 local.muscle.bin=binaries/src/muscle/muscle