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diff --git a/conf/log4j.properties b/conf/log4j.properties
index 6d52128..9fe9a23 100644
--- a/conf/log4j.properties
+++ b/conf/log4j.properties
@@ -1,6 +1,6 @@
 
 ## CHANGE THIS (The root directory where to store all the log files)  
-#logDir = .
+logDir = .
 
 ## Uncomment to enable JWS2 activity logging to standard out (to the console if available)
 ## for possible log levels please refer to Log4j documentation http://logging.apache.org/log4j/1.2/manual.html 
@@ -13,20 +13,20 @@
 ## FATAL - log fatal events only
 
 ## Uncomment this if you would like the system to log messages into stdout
-#log4j.rootLogger=ERROR, stdout
-#log4j.appender.stdout=org.apache.log4j.ConsoleAppender
-#log4j.appender.stdout.Target=System.out
-#log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
-#log4j.appender.stdout.layout.ConversionPattern=%m%n
+log4j.rootLogger=ERROR, stdout
+log4j.appender.stdout=org.apache.log4j.ConsoleAppender
+log4j.appender.stdout.Target=System.out
+log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
+log4j.appender.stdout.layout.ConversionPattern=%m%n
 
 ## Uncomment to enable JWS2 activity logging to the file
-#log4j.logger.compbio=ERROR, ACTIVITY
-#log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender
-#log4j.appender.ACTIVITY.File=${logDir}/activity.log
-#log4j.appender.ACTIVITY.MaxFileSize=10MB
-#log4j.appender.ACTIVITY.MaxBackupIndex=10000
-#log4j.appender.ACTIVITY.layout=org.apache.log4j.PatternLayout
-#log4j.appender.ACTIVITY.layout.ConversionPattern=%d{MM-dd@HH:mm:ss} %-5p %3x - %m%n
+log4j.logger.compbio=ERROR, ACTIVITY
+log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender
+log4j.appender.ACTIVITY.File=${logDir}/activity.log
+log4j.appender.ACTIVITY.MaxFileSize=10MB
+log4j.appender.ACTIVITY.MaxBackupIndex=10000
+log4j.appender.ACTIVITY.layout=org.apache.log4j.PatternLayout
+log4j.appender.ACTIVITY.layout.ConversionPattern=%d{MM-dd@HH:mm:ss} %-5p %3x - %m%n
 
 ## Uncomment for separate local engine execution log (debugging only)
 #log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C