X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2Fsettings%2FAAConParameters.xml;fp=conf%2Fsettings%2FAAConParameters.xml;h=ac75e6b1686bf737aa508e00cc7784eede7b51da;hb=049fa19b59e71660235858d1cb6ff22506e1840e;hp=e2d654342cb732f9f5c913959af3e81669fc93f0;hpb=fe7da3c651e6265333d07f5d8e72dcdbcf488b2c;p=jabaws.git
diff --git a/conf/settings/AAConParameters.xml b/conf/settings/AAConParameters.xml
index e2d6543..ac75e6b 100644
--- a/conf/settings/AAConParameters.xml
+++ b/conf/settings/AAConParameters.xml
@@ -11,35 +11,30 @@
Negative results first converted to positive by adding a greatest absolute
result value.
-n
+ -n
prog_docs/aacon.txt
+ KABAT-m=KABATprog_docs/aacon.txt#KABAT
+ JORES-m=JORESprog_docs/aacon.txt#JORES
+ SCHNEIDER-m=SCHNEIDERprog_docs/aacon.txt#SCHNEIDER
+ SHENKIN-m=SHENKINprog_docs/aacon.txt#SHENKIN-m=SHENKIN
+ GERSTEIN-m=GERSTEINprog_docs/aacon.txt#GERSTEIN
+ TAYLOR_GAPS-m=TAYLOR_GAPSprog_docs/aacon.txt#TAYLOR_GAPS
+ TAYLOR_NO_GAPS-m=TAYLOR_NO_GAPSprog_docs/aacon.txt#TAYLOR_NO_GAPS
+ ZVELIBIL-m=ZVELIBILprog_docs/aacon.txt#ZVELIBIL
+ KARLIN-m=KARLINprog_docs/aacon.txt#KARLIN
+ ARMON-m=ARMONprog_docs/aacon.txt#ARMON
+ THOMPSON-m=THOMPSONprog_docs/aacon.txt#THOMPSON
+ NOT_LANCET-m=NOT_LANCETprog_docs/aacon.txt#NOT_LANCET
+ MIRNY-m=MIRNYprog_docs/aacon.txt#MIRNY
+ WILLIAMSON-m=WILLIAMSONprog_docs/aacon.txt#WILLIAMSON
+ LANDGRAF-m=LANDGRAFprog_docs/aacon.txt#LANDGRAF
+ SANDER-m=SANDERprog_docs/aacon.txt#SANDER
+ VALDAR-m=VALDARprog_docs/aacon.txt#VALDAR
+ SMERFS-m=SMERFSprog_docs/aacon.txt#SMERFS
+
=
- Calculation method
- The method of the calculation to use
- -m
- prog_docs/aacon.txt
- SHENKIN
- KABAT
- JORES
- SCHNEIDER
- SHENKIN
- GERSTEIN
- TAYLOR_GAPS
- TAYLOR_NO_GAPS
- ZVELIBIL
- KARLIN
- ARMON
- THOMPSON
- NOT_LANCET
- MIRNY
- WILLIAMSON
- LANDGRAF
- SANDER
- VALDAR
- SMERFS
-
-
SMERFS Window Width
The width of the window for SMERFS. Optional, defaults to 7
-smerfsWW