X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2Fsettings%2FAAConParameters.xml;h=e2d654342cb732f9f5c913959af3e81669fc93f0;hb=35947b9e0b6ae1be74f17d15cd6a65ceadc6d310;hp=2274cd3045078fbf19390d52ba93528212c03c1e;hpb=eee7bbead2d812ef1aa67389ae2d1c4884c47458;p=jabaws.git

diff --git a/conf/settings/AAConParameters.xml b/conf/settings/AAConParameters.xml
index 2274cd3..e2d6543 100644
--- a/conf/settings/AAConParameters.xml
+++ b/conf/settings/AAConParameters.xml
@@ -11,14 +11,14 @@
 	 	Negative results first converted to positive by adding a greatest absolute 
 	 	result value.</description>
 		<optionNames>-n</optionNames>
-		<furtherDetails>http://www.compbio.dundee.ac.uk/jabaws/prog_docs/aacon.txt</furtherDetails>
+		<furtherDetails>prog_docs/aacon.txt</furtherDetails>
 	</options>
 	<prmSeparator>=</prmSeparator>
 	<parameters>
 		<name>Calculation method</name>
 		<description>The method of the calculation to use</description>
 		<optionNames>-m</optionNames>
-		<furtherDetails>http://www.compbio.dundee.ac.uk/jabaws/prog_docs/aacon.txt</furtherDetails>
+		<furtherDetails>prog_docs/aacon.txt</furtherDetails>
 		<defaultValue>SHENKIN</defaultValue>
         <possibleValues>KABAT</possibleValues>
         <possibleValues>JORES</possibleValues>
@@ -43,7 +43,7 @@
 		<name>SMERFS Window Width</name>
 		<description>The width of the window for SMERFS. Optional, defaults to 7</description>
 		<optionNames>-smerfsWW</optionNames>
-		<furtherDetails>http://www.compbio.dundee.ac.uk/jabaws/prog_docs/aacon.txt</furtherDetails>
+		<furtherDetails>prog_docs/aacon.txt</furtherDetails>
 		<defaultValue>7</defaultValue>
 		<validValue>
         	<type>Integer</type>
@@ -59,7 +59,7 @@
 	        MAX_SCORE - gives the column the highest score of all the windows it 
 	        belongs to. Optional defaults to MID_SCORE. </description>
 		<optionNames>-smerfsCS</optionNames>
-		<furtherDetails>http://www.compbio.dundee.ac.uk/jabaws/prog_docs/aacon.txt</furtherDetails>
+		<furtherDetails>prog_docs/aacon.txt</furtherDetails>
 		<defaultValue>MID_SCORE</defaultValue>
 		<possibleValues>MAX_SCORE</possibleValues>
         <possibleValues>MID_SCORE</possibleValues>
@@ -68,7 +68,7 @@
 		<name>SMERFS Gap Threshhold</name>
 		<description>a gap percentage cutoff - a float greater than 0 and smaller or equal 1. Optional defaults to 0.1</description>
 		<optionNames>-smerfsGT</optionNames>
-		<furtherDetails>http://www.compbio.dundee.ac.uk/jabaws/prog_docs/aacon.txt</furtherDetails>
+		<furtherDetails>prog_docs/aacon.txt</furtherDetails>
 		<defaultValue>0.1</defaultValue>
 		<validValue>
         	<type>Float</type>