X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2Fsettings%2FClustalLimits.xml;h=52b0ef3d778fd6942a511a391e596aa4d4461d39;hb=26166c1ca1dd3761305024cef6ee6ae67c6c135f;hp=d4904028793acdd8918dd0acc32765ab4b06b299;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git

diff --git a/conf/settings/ClustalLimits.xml b/conf/settings/ClustalLimits.xml
index d490402..52b0ef3 100644
--- a/conf/settings/ClustalLimits.xml
+++ b/conf/settings/ClustalLimits.xml
@@ -1,18 +1,22 @@
 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>
 <limits>
  <runnerClassName>compbio.runner.clustal.ClustalW</runnerClassName>
-	<limit isDefault="false">
-		<preset>Disable gap weighting (Speed-oriented)</preset>
-		<seqNumber>2000</seqNumber>
-		<seqLength>1000</seqLength>
-	</limit>
 	<limit isDefault="true">
-		<seqNumber>1000</seqNumber>
-		<seqLength>1000</seqLength>
+		<seqNumber>100000</seqNumber>
+		<seqLength>100000</seqLength>
 	</limit>
 	<limit isDefault="false">
 		<preset># LocalEngineExecutionLimit #</preset>
-		<seqNumber>500</seqNumber>
-		<seqLength>1000</seqLength>
+		<seqNumber>100000</seqNumber>
+		<seqLength>100000</seqLength>
+	</limit>
+
+	<!-- Uncomment/edit these if you would like to have separate limits for presets	-->
+	<!-- 
+	<limit isDefault="false">
+		<preset>Disable gap weighting (Speed-oriented)</preset>
+		<seqNumber>1000</seqNumber>
+		<seqLength>3000</seqLength>
 	</limit>
+	 -->
 </limits>