X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2Fsettings%2FJpredPresets.xml;h=5407708139aa7f4a6df39202a32c0a94580876c4;hb=77c2047d3b2cb8839784b29f5f2a659101dafd67;hp=3f9b72b4311a2a12a60b756dc68252077f73efe9;hpb=eaab4fb0f66b493e9097a46260c146c575bb5cf4;p=jabaws.git

diff --git a/conf/settings/JpredPresets.xml b/conf/settings/JpredPresets.xml
index 3f9b72b..5407708 100644
--- a/conf/settings/JpredPresets.xml
+++ b/conf/settings/JpredPresets.xml
@@ -3,21 +3,48 @@
     <runnerClassName>compbio.runner.predictors.Jpred</runnerClassName>
 
     <preset>
-        <name>cluser configuration</name>
+        <name>cluser-single</name>
         <description>
-            Dundee cluser configuration
+            Dundee cluser configuration for single sequence prediction
         </description>
         <optlist>
 			<option>-dbpath /homes/www-jpred/databases </option>
 			<option>-dbname uniref90</option>
 			<option>-jabaws</option>
+			<option>-seq</option>
         </optlist>
     </preset>
 
     <preset>
-        <name>laptop configuration</name>
+        <name>cluster-alignment</name>
         <description>
-            My 4-core laptop configuration
+            Dundee cluser configuration for multiple sequence alignment prediction
+        </description>
+        <optlist>
+			<option>-dbpath /homes/www-jpred/databases </option>
+			<option>-dbname uniref90</option>
+			<option>-jabaws</option>
+        </optlist>
+    </preset>
+
+    <preset>
+        <name>single</name>
+        <description>
+            4-core laptop configuration for single sequence prediction
+        </description>
+        <optlist>
+            <option>-dbpath /data/UNIREFdb/</option>
+            <option>-dbname ported_db</option>
+            <option>-ncpu 3</option>
+            <option>-jabaws</option>
+            <option>-seq</option>
+        </optlist>
+    </preset>
+
+    <preset>
+        <name>alignemnt</name>
+        <description>
+            4-core laptop configuration for multiple sequence alignment prediction
         </description>
         <optlist>
             <option>-dbpath /data/UNIREFdb/</option>