X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=doc%2Findex.html;h=d694c673adacfd2f9092162eae3a136becdbecd4;hb=fed4354148da6576ec8e52b1b6d97dd3578b735b;hp=12824eb4ebd5229ddfd6838eeee4afd947e6b568;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/doc/index.html b/doc/index.html
index 12824eb..d694c67 100644
--- a/doc/index.html
+++ b/doc/index.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -32,11 +32,12 @@ Jalview Source Documentation
 	information about each task, and there's lots of comments too.</li>
 	<li></li>
 	<li>src - all jalview source packages, including any specially
-	adapted code from other GPL programs. See <a href="developing.html">Jalvew
+	adapted code from other GPL programs. See <a href="developing.html">Jalview
 	Development</a> for more info.</li>
 	<li>lib - All the libraries that Jalview depends on. Every jar
 	file in this directory should be added to the classpath when building
 	or running the jalview application.</li>
+	<li>appletlib - Any libraries that are specifically required for compiling and/or running the jalviewLite applet (e.g. an applet build of Jmol).
 	<li>help - the jalview JavaHelp documents<br>
 	<ul>
 		<li>help.hs - the main index page. This is generated by the
@@ -137,12 +138,15 @@ Jalview Source Documentation
 		documentation.</li>
 	</ul>
 	</li>
-	<li>dist - where the Jars and JNLP file for the java webstart distribution is generated.</li>
 	<li>installAnywhere - where the installAnywhere build is generated</li>
 	<li><em>keys</em> - you might not have this - see <a
 		href="building.html">building</a> for info on how to create it.</li>
-</ul>
-</li>
+<li>dist - where the Jars and JNLP file for the java webstart distribution is generated, and where a copy of the examples directory is created complete with jalviewApplet.jar and the contents of appletlib/*.jar.</li>
+<li>examples - a set of example jalview projects and web pages demonstrating the jalviewLite applet. This is essentially mirrors the <a href="http://www.jalview.org/examples/">www.jalview.org/examples</a> directory on Jalview's website.</li>
+<li>nbbuild.xml - custom config used by the vanilla netbeans project in nbproject</li>
+<li>nbproject - vanilla netbeans project</li>
+<li>JalviewApplet.jpx, JalviewX.jpx - old JBuilder project files</li>
+<li>.project - eclipse .project definition</li>
 </ul>
 
 </body>
