X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=engine%2Fcompbio%2Fengine%2FProteoCachePropertyHelperManager.java;h=f5f67bb8f47b1a245ca2504c942542a584337b03;hb=006363dc999cef4e9c49dd6a38ea0d78cbb62472;hp=461529748b8a0ab65995755181307fda222971a6;hpb=6823d2f36ff55b7ab11d674e3fe4d04dc57d6bbf;p=proteocache.git

diff --git a/engine/compbio/engine/ProteoCachePropertyHelperManager.java b/engine/compbio/engine/ProteoCachePropertyHelperManager.java
index 4615297..f5f67bb 100644
--- a/engine/compbio/engine/ProteoCachePropertyHelperManager.java
+++ b/engine/compbio/engine/ProteoCachePropertyHelperManager.java
@@ -34,26 +34,22 @@ public final class ProteoCachePropertyHelperManager {
 	private static PropertyHelper ph = null;
 
 	/**
-	 * Ways to fix path problem: 
-	 * 1) find a path to WEB-INF directory based on the path to a known class. 
-	 * Then prepend this absolute path to the rest of paths 
-	 * pros: no input from user 
-	 * cons: relocation of the source may cause problems 
+	 * Ways to fix path problem: 1) find a path to WEB-INF directory based on
+	 * the path to a known class. Then prepend this absolute path to the rest of
+	 * paths pros: no input from user cons: relocation of the source may cause
+	 * problems
 	 * 
-	 * 2) Require users to add configuration directories to the class
-	 * path and then load entries from it. 
-	 * pros: 
-	 * cons: Many paths needs to be added. Put significant burden on the user. 
-	 * Hard to tell web appl server to add these entries to its class path. 
+	 * 2) Require users to add configuration directories to the class path and
+	 * then load entries from it. pros: cons: Many paths needs to be added. Put
+	 * significant burden on the user. Hard to tell web appl server to add these
+	 * entries to its class path.
 	 * 
-	 * 3) Ask for project source directory explicitly in the configuration. 
-	 * pros:
-	 * cons: similar to 1, but this initial configuration file must reside in 
-	 * well known location! Why ask users what can be found automatically?
+	 * 3) Ask for project source directory explicitly in the configuration.
+	 * pros: cons: similar to 1, but this initial configuration file must reside
+	 * in well known location! Why ask users what can be found automatically?
 	 * 
-	 * 4) Have everything in the location already in class path for tomcat. 
-	 * pros:
-	 * cons: only classes and lib/*.jar are added, Eclipse will remove non 
+	 * 4) Have everything in the location already in class path for tomcat.
+	 * pros: cons: only classes and lib/*.jar are added, Eclipse will remove non
 	 * classses from classes dir.
 	 * 
 	 * Try 1 - succeed.
@@ -84,11 +80,8 @@ public final class ProteoCachePropertyHelperManager {
 
 	/**
 	 * Method return the absolute path to the project root directory. It assumes
-	 * the following structure of the project:
-	 * project-root: 
-	 * conf/settings
-	 * binaries 
-	 * WEB-INF/classes/compbio/engine/conf/PropertyHelperManager.class
+	 * the following structure of the project: project-root: conf/settings
+	 * binaries WEB-INF/classes/compbio/engine/conf/PropertyHelperManager.class
 	 * If the structure changes it must be reflected in this method
 	 * 
 	 * @return the local path
@@ -112,8 +105,8 @@ public final class ProteoCachePropertyHelperManager {
 		} catch (IllegalArgumentException e) {
 			// Classes are in the jar file, using different method to determine
 			// the path new File(INCORRECT URL) throws it
-			String mes = "It looks like classes are in the jar file. " 
-			           + "Attempting a different method to determinine the path to the resources";
+			String mes = "It looks like classes are in the jar file. "
+					+ "Attempting a different method to determinine the path to the resources";
 			log.debug(mes + e.getLocalizedMessage(), e.getCause());
 			try {
 				f = new File(ProteoCachePropertyHelperManager.class.getProtectionDomain().getCodeSource().getLocation().toURI().getPath());
@@ -147,4 +140,5 @@ public final class ProteoCachePropertyHelperManager {
 			return Boolean.parseBoolean(propValue);
 		}
 		return false;
-	}}
+	}
+}