X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FappletDeployment.html;h=9438fa43dbd97efde903f4114c6a5fdff202a312;hb=a8d1e3d9e96b19a53c1fc53e777991314ae4b7f2;hp=030122532bc591ba04bb99c6fcd444b7dd7826b3;hpb=aa942b856b678f7461f041850495698a46e9c7c7;p=jalview.git

diff --git a/examples/appletDeployment.html b/examples/appletDeployment.html
index 0301225..9438fa4 100644
--- a/examples/appletDeployment.html
+++ b/examples/appletDeployment.html
@@ -46,7 +46,7 @@
   </tr>
 </table>
 
-<p>The snippet below shows a mininmal code for embeding Jalview applet into a web page.    
+<p>To run Jalview applet in your web page download the Jars listed above. The snippet below shows a minimal code for embedding Jalview applet into a web page.    
 <pre><code>
 &lt;applet code="jalview.bin.JalviewLite" width="756" height="560" archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"&gt;
 	&lt;param name="permissions" value="sandbox" /&gt;
@@ -63,26 +63,38 @@
 &lt;/applet&gt;
 </code></pre> 
 
-For more information and advanced options, see the <a href="javascript:doSubmit('appletParameters')"><strong>applet parameters page</strong></a>, and other documentation in the links to the left. 
-  <ul>
-          <li>Package all your data files into a single (or multiple) zip / jar 
-            files. This is very useful to reduce download time of large data files. 
-            The applet archive tag can take multiple entries separated by commas, 
-            eg<br>
-            <pre>&lt;applet code=&quot;jalview.bin.JalviewLite&quot;<em><strong> archive=&quot;jalviewApplet.jar, mydata.zip&quot;</strong></em>&gt;
-            </pre></li>
-          <li> Use Jalview for input to a HTML form. For an example of how to 
-            code this using Javascript, click <a href="javascript:doSubmit('formComplete')">here</a>. 
-            <br>
-          </li>
-          <li>Embed Jalview into the web page, without the &quot;Start Jalview&quot; 
-            button by setting the embed parameter to true;<br>
-            &lt;param name=&quot;embedded&quot;
-          value=&quot;true&quot;&gt; </li>
-	<li><a href="javascript:doSubmit('appletParameters')">View full list of supported parameters here.</a> </li>
-        </ul>
-        
-        <p><strong>**NEW FEATURES** in Jalview 2.9</strong></p> 
+
+
+
+<ul>
+	<li>View full list of <a href="javascript:doSubmit('appletParameters')"> supported applet parameters here.</a></li>
+	<li>Package all your data files into a single (or multiple) zip /
+		jar files. This is very useful to reduce download time of large data
+		files. The applet archive tag can take multiple entries separated by
+		commas, eg<br> <pre>&lt;applet code=&quot;jalview.bin.JalviewLite&quot;<em><strong> archive=&quot;jalviewApplet.jar, mydata.zip&quot;</strong></em>&gt;
+            </pre>
+	</li>
+	<li>Use Jalview for input to a HTML form. For an example of how to
+		code this using Javascript, click <a
+		href="javascript:doSubmit('formComplete')">here</a>. <br>
+	</li>
+	<li>Embed Jalview into the web page, without the &quot;Start
+		Jalview&quot; button by setting the embed parameter to true;<br>
+		&lt;param name=&quot;embedded&quot; value=&quot;true&quot;&gt;
+	</li>
+	<li>For more examples, see the links to the left.</li>
+</ul>
+
+<table border="1" width=80%>
+	<tr><th colspan="2">Applet Release History</th>
+	<tr>
+		<th>Release</th>
+
+		<th>New Features / required changes</th>
+	</tr>
+	<tr>
+		<td><strong>2.9<br>(Latest)</strong></td>
+		<td>
         <ul>
         <li>Split Views for cDNA and Protein alignments<br/>Specify second alignment with 'file2' parameter, and set cDNA/Protein column scaling with scaleProteinAsCdna
         </li>
@@ -95,9 +107,11 @@ For more information and advanced options, see the <a href="javascript:doSubmit(
             <pre>archive=&quot;jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,<font color="red">java-json.jar,json_simple-1.1.jar</font>&quot;</pre>		
 	</li>
         </ul>
-        </p>
-        <p><strong>**NEW FEATURES** in Jalview 2.8</strong></p> 
-        <ul>
+		</td>
+	</tr>
+	<tr>
+		<td><strong>2.8</strong></td>
+		<td><ul>
         <li>Normalised sequence logo display
         </li>
         <li>RNA secondary structure annotation row
@@ -112,9 +126,11 @@ For more information and advanced options, see the <a href="javascript:doSubmit(
             original Jalview structure viewer will still be available. <br>
           </li>
           
-        </ul>
-        <p><strong>**NEW FEATURES** in Jalview 2.7</strong></p>
-        <ul>
+        </ul></td>
+	</tr>
+	<tr>
+		<td><strong>2.7</strong></td>
+		<td><ul>
         <li>Javascript callbacks capabilities<ul><li>oninit parameter and methods for registering javascript handlers for selections, mouseovers and linking to Jmol applets on the page.</li>
         <li>To use javascript callbacks, ensure the applet tag includes the '<a href="http://download.oracle.com/javase/6/docs/technotes/guides/plugin/developer_guide/java_js.html">mayscript</a>' attribute - either as a parameter (&lt;param name="mayscript" value="true"/;gt;) or as a bare attribute in the applet html tag).</li></ul>
         </li>
@@ -127,13 +143,17 @@ For more information and advanced options, see the <a href="javascript:doSubmit(
           the Jmol binary distribution available at the Jmol Sourceforge site, 
           or <a href="JmolApplet-12.1.13.jar">download the Jmol applet from here</a></li>
           <li>Minimum recommended version of Java runtime for the applet is now 1.5 (JalviewLite v2.6 without the Jmol viewer may work ok on earlier Java environments but compatibility can no-longer be guaranteed).</li>
-  </ul>
-        <br><strong>**NEW FEATURES** in Jalview 2.5</strong></p>
-        <ul>
-        <li>New parameters to control display of tree annotation, width of alignment columns, and to disable the jalview button and check for Jmol on startup.</li>
-  </ul>        
-        <br><strong>**NEW FEATURES** in Jalview 2.4</strong></p>
-        <ul>
+  </ul></td>
+	</tr>
+	<tr>
+		<td><strong>2.5</strong></td>
+		<td><ul>
+        <li>New parameters to control display of tree annotation, width of alignment columns, and to disable the jalview button and check for Jmol on startup.</li>  </ul>
+    </td>
+	</tr>
+	<tr>
+		<td><strong>2.4</strong></td>
+		<td><ul>
         <li>New applet API methods for feature display control, views, and obtaining current selection via javascript.</li>
           <li>Group show and hide parameters:
         &quot;showfeaturegroups&quot; and
@@ -145,9 +165,11 @@ For more information and advanced options, see the <a href="javascript:doSubmit(
         <li>&quot;debug&quot; parameter to control verbosity of the applet's console output.</li>
         <li>&quot;showbutton&quot; parameter to disable launch button and open JalviewLite immediatly.</li>
         <li>&quot;nojmol&quot; parameter to disable check for Jmol classes.</li>
-        </ul><br>
-        <strong>**NEW FEATURES** in Jalview 2.3</strong></p>
-        <ul>
+        </ul></td>
+	</tr>
+	<tr>
+		<td><strong>2.3</strong></td>
+		<td><ul>
           <li>Note that Parameter &quot;PDBFile&quot; now takes 
             the PDB file followed by a space separated list of alignment sequence 
             ids to associate the structure to. It is also possible to associate 
@@ -167,12 +189,13 @@ For more information and advanced options, see the <a href="javascript:doSubmit(
           <li>Note parameter &quot;PDBSeq&quot; is no longer required.<br>
           </li>
           <li>Jalview 2.3 was updated to work with Jmol 11. See the <a href="/development">versions archive if you want to download the old Jmol applet</a>.</li> 
-            <p>&nbsp;</p>
-          </li>
-        </ul>
-        <strong>**NEW FEATURES** in Jalview 2.1</strong> 
-        <ul>
-          <li>Jalview Applet can read and display JNet secondary structure annotation 
+          
+        </ul></td>
+	</tr>
+	<tr>
+		<td><strong>2.1</strong></td>
+		<td><ul>
+          <li>Jalview Applet can read and display JPred secondary structure annotation 
             directly via the <strong>jnetfile</strong> parameter. <br>
           </li>
           <li>Param &quot;UserDefinedColour&quot; - specify your own colours for each residue using a semi colon 
@@ -199,5 +222,9 @@ For more information and advanced options, see the <a href="javascript:doSubmit(
             &lt;param name=&quot;sequence2&quot; value=&quot;FER1_PEA/14-29 TSFLRTQPMPMSVTTT&quot;&gt;<br>
             </pre>(All the usual Jalview File formats are valid, however each 
             new line in an alignment file must be entered as a parameter)</li>
-        </ul>
+        </ul></td>
+	</tr>
+</table>
+
+        
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