X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FappletDeployment.html;h=e9c22e563394fd0a81254cbb082b6151dc7b58b4;hb=02f8e0098609a768e6a1a21c5c2928f81b5bf299;hp=030122532bc591ba04bb99c6fcd444b7dd7826b3;hpb=aa942b856b678f7461f041850495698a46e9c7c7;p=jalview.git diff --git a/examples/appletDeployment.html b/examples/appletDeployment.html index 0301225..e9c22e5 100644 --- a/examples/appletDeployment.html +++ b/examples/appletDeployment.html @@ -33,7 +33,7 @@ Main Jalview Applet Jar - JmolApplet-14.2.14_2015.06.11.jar + JmolApplet-14.6.4_2016.10.26.jar Jmol Applet Jar @@ -46,9 +46,9 @@ -

The snippet below shows a mininmal code for embeding Jalview applet into a web page. +

To run Jalview applet in your web page download the Jars listed above. The snippet below shows a minimal code for embedding Jalview applet into a web page. 


-<applet code="jalview.bin.JalviewLite" width="756" height="560" archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar">
+<applet code="jalview.bin.JalviewLite" width="756" height="560" archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar">
 	<param name="permissions" value="sandbox" />
 	<param name="file" value="plantfdx.fa" />
 	<param name="features" value="plantfdx.features" />
@@ -63,26 +63,38 @@
 </applet>
-For more information and advanced options, see the applet parameters page, and other documentation in the links to the left. - - -

**NEW FEATURES** in Jalview 2.9

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Applet Release History
ReleaseNew Features / required changes
2.9
(Latest)
  • Split Views for cDNA and Protein alignments
    Specify second alignment with 'file2' parameter, and set cDNA/Protein column scaling with scaleProteinAsCdna
    • @@ -95,9 +107,11 @@ For more information and advanced options, see the java-json.jar,json_simple-1.1.jar"
-

-

**NEW FEATURES** in Jalview 2.8

-
    +
2.8
  • Normalised sequence logo display
  • RNA secondary structure annotation row @@ -112,9 +126,11 @@ For more information and advanced options, see the mayscript' attribute - either as a parameter (<param name="mayscript" value="true"/;gt;) or as a bare attribute in the applet html tag).
@@ -127,13 +143,17 @@ For more information and advanced options, see the download the Jmol applet from here
  • Minimum recommended version of Java runtime for the applet is now 1.5 (JalviewLite v2.6 without the Jmol viewer may work ok on earlier Java environments but compatibility can no-longer be guaranteed).
    • - -
    **NEW FEATURES** in Jalview 2.5

    -
      -
    • New parameters to control display of tree annotation, width of alignment columns, and to disable the jalview button and check for Jmol on startup.
      • -
    -
    **NEW FEATURES** in Jalview 2.4

    -
      +
    2.5
      +
    • New parameters to control display of tree annotation, width of alignment columns, and to disable the jalview button and check for Jmol on startup.
    +
    2.4 - **NEW FEATURES** in Jalview 2.1 -
      -
    • Jalview Applet can read and display JNet secondary structure annotation + +
    2.1
      +
    • Jalview Applet can read and display JPred secondary structure annotation directly via the jnetfile parameter.
    • Param "UserDefinedColour" - specify your own colours for each residue using a semi colon @@ -199,5 +222,9 @@ For more information and advanced options, see the