X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FappletParameters.html;h=6dd26e2b03370085d081b43c5473b9fdfd3a6226;hb=d8d179f9c399205f61e7b936dd11a061bfb5de80;hp=fdcdb33ddfca222f15169d86821e1b316f5ccbe7;hpb=1d415c4766233d4710950f6b5384eab64bb629bb;p=jalview.git
diff --git a/examples/appletParameters.html b/examples/appletParameters.html
index fdcdb33..6dd26e2 100644
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -17,6 +17,9 @@
* The Jalview Authors are detailed in the 'AUTHORS' file.
-->
+
+
Click here to view decorated page
+
JalviewLite Applet Parameter Documentation
@@ -47,7 +50,12 @@ the applet can be interacted with via its
file2 |
fileName |
A second file to open. If one file is nucleotide and the other peptide, and at least one peptide sequence
- is the translation of one of the nucleotide sequences, then alignments will be displayed linked in a split frame (since 2.9). |
+ matches the translation of one of the nucleotide sequences, then alignments will be displayed linked in a Split Frame. Parameter is ignored if enableSplitFrame is set to false (since 2.9).
+
+
+ enableSplitFrame |
+ true or false (default true) |
+ Enable or disable the display of linked cDNA and Protein alignments in a split frame (since 2.9). |
sequence1,
@@ -352,6 +360,13 @@ the applet can be interacted with via its
<param name="embedded"
value="true">
+
+ **NEW FEATURES** in Jalview 2.9
+
+ - Split Views for cDNA and Protein alignments
Specify second alignment with 'file2' parameter, and set cDNA/Protein column scaling with scaleProteinAsCdna
+
+
+
**NEW FEATURES** in Jalview 2.8
- Normalised sequence logo display
@@ -456,4 +471,4 @@ the applet can be interacted with via its
(All the usual Jalview File formats are valid, however each
new line in an alignment file must be entered as a parameter)
-
\ No newline at end of file
+
|