X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=05a50ae215da273d60214c31021ecda16e0d454b;hb=2d194c0fb039def421fae69cb997fe88080b0df7;hp=2af2591c62f22dfb6bd57916526265fec0e81f5b;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html index 2af2591..05a50ae 100755 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,329 +1,340 @@ - + - + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) + * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + --> - -Jalview - Applets - - - - + JalviewLite Examples + + + + + + + + + + + + - - - - -
- + + + + + + + + +
+ + + +
+ + + + +
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+ Examples aren't working ?
Try the unsigned applet demos +
+
+

Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar +

+
+
+ + + +

+

JalviewLite Button Examples

+Try out JalviewLite by pressing one of the buttons below.
+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

+
+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+
+ + + + + + + + + + + + - + +
+ + + + + + + + + + + + + + + +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + +Displays a features file on the alignment
+ + + + + + + + + + + + + + + +Associates PDB file 1GAQ with sequence + FER1_MAIZE
        + + + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence
- - - - +

+

RF00031 RFAM Alignment with per sequence secondary + structure

+

+
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Please send problems
and - bug reports to the discussion list.
- -
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- 		-

Jalview comes in two distinct flavours.
-
- The main application allows connection to multiple web services provided - at the University of Dundee as well as a host of additional useful features - such as printing, making images from your alignment and annotating your - alignment. You need to download and install this software.

-

The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets.

-

For more information on how to use the applet in your - website, see full list of applet - parameters.

-

Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

-

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

-
-
- - - - -
- - - - -
- - - - - - - - - - - - - - User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - Displays a features file on the alignment
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - - Associates PDB file 1GAQ with sequence FER1_MAIZE
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - - - Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence
-

 

- - - - -
- - - - -
- - - - - - - - - - - - Displays an RFAM RNA fold family with secondary structure annotation
-
-

 

-

For more JalviewLite examples, follow the links below. -

-
+ + +
+ + + + + + + + + +Displays an RFAM RNA fold family with + secondary structure annotation
+ + + + + + + + + - +