Jalview - Applets

+ -

+ Examples aren't working ?
Try the unsigned applet demos +

Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar +

JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive - display for precalculated alignments, features and annotations files. - It lacks some functionality available in the Jalview Desktop, however, such - as making images, saving files, and running web service jobs. This is mostly due to security - restrictions imposed on applets.

For more information on how to use the applet in your - website, see full list of applet - parameters.

Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

- - - - -

- - - - - - - - - - - - - -

User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.

- - - - -

- - - - - - - - - - - - - - -

Displays a features file on the alignment

- - - - -

- - - - - - - - - - - - - - - -

Associates PDB file 1GAQ with sequence FER1_MAIZE

- - - - -

- - - - - - - - - - - - - - - - -

Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence

- - - - -

- - - - - - - - - - - -

Displays an RFAM RNA fold family with secondary structure annotation

+ + +

JalviewLite Button Examples

+Try out JalviewLite by pressing one of the buttons below.
+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +

+ + + + + + + + + + + + + + + +	User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + +	Displays a features file on the alignment
+ + + + + + + + + + + + + + + +	Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + +	Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence

RF00031 RFAM Alignment with per sequence secondary + structure

+ + + + + +

+ + + + + + + + + +

Displays an RFAM RNA fold family with + secondary structure annotation

Linked amino acid and cDNA alignments for homologous proteins

+ + + + + +

+ + + + + + + + + + + + + +

Displays a split window view of protein and its related cDNA

+ + + + +

Published under CC-SA 3.0

If you use Jalview in your work, please cite this publication: @@ -326,11 +359,10 @@ If you use Jalview in your work, please cite this publication:

Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009) "Jalview Version 2 - a multiple sequence alignment editor and analysis workbench" -Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033 +Bioinformatics 25 (9) 1189-1191 doi: 10.1093/bioinformatics/btp033

- \ No newline at end of file

Ferredoxins, chloroplast precursor related UniRef50 - cluster - (15 sequences x 150 residues)

JalviewLite Button Examples

Ferredoxins, chloroplast precursor related UniRef50 + cluster

RF00031 RFAM Alignment with per sequence secondary + structure

Linked amino acid and cDNA alignments for homologous proteins

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)