JalviewLite is a web based version of Jalview, which runs as a - Java applet in or on a web page. It's one of the easiest ways of - providing an interactive display for precalculated alignments, - features and annotations files. It lacks some functionality - available in the Jalview Desktop, however, such as making images, - saving files, and running web service jobs. This is mostly due to - security restrictions imposed on applets.
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- For more information on how to use the applet in your website, see full list of
- applet
- Pressing one of the buttons below will load up JalviewLite,
- a cut down version parameters.
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+ For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left. +
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Ferredoxins, chloroplast precursor related UniRef50 + + +
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JalviewLite Button Examples
+Try out JalviewLite by pressing one of the buttons below. + View the source for the examples below here (If the link doesn't work on your browser try going to this page and viewing the page source manually).+ For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left. +
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(15 sequences x 150 residues) - -
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Ferredoxins, chloroplast precursor related UniRef50 cluster
-(15 sequences x 150 residues) - -
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| + + | User Defined Colours, loads an associated - Newick format tree file which is used to sort the alignment, and - group consensus and sequence logos are shown below the alignment. | -
| + code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + | Displays a features file on the alignment | -
| + code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + + | Associates PDB file 1GAQ with sequence - FER1_MAIZE | -
| - | Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence | -
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RF00031 RFAM Alignment with per seqeunce secondary - structure
- -| + code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + | Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence | +
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RF00031 RFAM Alignment with per sequence secondary + structure
+ +| + | Displays an RFAM RNA fold family with - secondary structure annotation | -
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Linked Protein and cDNA alignments for a family of Steroid Receptors
+ +| + + | +Displays a split window view showing aligned protein
+ and a reconstructed cDNA alignment. Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop). Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 + |
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