X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=32203f28acb7331665d9e25dad550b115506e474;hb=26ce1755b5ec689580d683184f7e2d921143a0ba;hp=b1d2f830931eb7ad16d7e32d319e90bd5cef7e9a;hpb=f42b2964f801f8dfee54ef7ebeacebea2d92e5ad;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html old mode 100755 new mode 100644 index b1d2f83..32203f2 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,7 +1,6 @@ - - - -Jalview - Applets - - - - - - + - - - - - - - - - - - - - - - -
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Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar +

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-

JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive - display for precalculated alignments, features and annotations files. - It lacks some functionality available in the Jalview Desktop, however, such - as making images, saving files, and running web service jobs. This is mostly due to security - restrictions imposed on applets.

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For more information on how to use the applet in your - website, see full list of applet - parameters.

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Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

-

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

-
-
- - - - -
- - - - -
- - - - - - - - - - - - - - User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
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- - - - -
- - - - -
- - - - - - - - - - - - - - - Displays a features file on the alignment
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - - Associates PDB file 1GAQ with sequence FER1_MAIZE
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- - - - -
- - - - -
- - - - - - - - - - - - - - - - - Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence
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- - - - -
- - - - -
- - - - - - - - - - - - Displays an RFAM RNA fold family with secondary structure annotation
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- - - - \ No newline at end of file + + +

+

JalviewLite Button Examples

+Try out JalviewLite by pressing one of the buttons below.
+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

+

 

+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + +Displays a features file on the alignment
+ + + + + + + + + + + + + + + + +Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence
+

+

RF00031 RFAM Alignment with per sequence secondary + structure

+

+ + + + + +
+ + + + + + + + + +Displays an RFAM RNA fold family with + secondary structure annotation
+