X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=9437aed7195d7b203dde6f9f77186f7be9bd3d6e;hb=6e23a164b465e79b78230d042159f4c8cc1fa9f0;hp=a768be6163f2c32a803fab10063f317572704337;hpb=c96d1ad3a9353b165fd761e910ecebd3e76cbe69;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html index a768be6..9437aed 100755 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,134 +1,329 @@ - + + + + Jalview - Applets -
       
-

Jalview comes in two distinct flavours.
-
- The main application allows connection to multiple web services provided - at the University of Dundee as well as a host of additional useful features - such as printing, making images from your alignment and annotating your - alignment. You need to download and install this software.

-

The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets.

-

For more information on how to use the applet in your - website, see full list of applet - parameters.

-

Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

-

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

-
-
- - - - -
- - - - -
- - - - - - - - - User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - Displays a features file on the alignment
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - Associates PDB file 1GAQ with sequence FER1_MAIZE
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - - - Displays a Multiple Sequence Alignment Based - JNet Prediction for a Sequence

 

For more JalviewLite examples, follow the links below.

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+ +
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JalviewLite is a web based version of Jalview, which runs as a + Java applet in or on a web page. It's one of the easiest ways of + providing an interactive display for precalculated alignments, + features and annotations files. It lacks some functionality + available in the Jalview Desktop, however, such as making images, + saving files, and running web service jobs. This is mostly due to + security restrictions imposed on applets.

+

+ For more information on how to use the applet in your website, see full list of + applet +

Pressing one of the buttons below will load up JalviewLite, + a cut down version parameters. + +

+ of Jalview, which runs within your web browser. +

+
+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + Displays a features file on the alignment
+ + + + + + + + + + + + + + + Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence
+

+

RF00031 RFAM Alignment with per seqeunce secondary + structure

+

+ + + + + +
+ + + + + + + + + + + Displays an RFAM RNA fold family with + secondary structure annotation
+
+
+
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