X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=9d94c69dba87558122b90cb016d1e8f0bf2b7373;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=d67c8b15267f5e0a1bcdec4e43ae1aa98777e576;hpb=ef4e1e730bcd4a6ae92f422f8877fd4026cbde3b;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html index d67c8b1..9d94c69 100755 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,134 +1,342 @@ - -Jalview - Applets -
       
-

Jalview comes in two distinct flavours.
-
- The main application allows connection to multiple web services provided - at the University of Dundee as well as a host of additional useful features - such as printing, making images from your alignment and annotating your - alignment. You need to download and install this software.

-

The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets.

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For more information on how to use the applet in your - website, see full list of applet - parameters.

-

Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

-

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

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-
- - - - -
- - - - -
- - - - - - - - - User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - Displays a features file on the alignment
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - Associates PDB file 1GAQ with sequence FER1_MAIZE
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- - - - -
- - - - -
- - - - - - - - - - - - - - - - - Displays a Multiple Sequence Alignment Based - JNet Prediction for a Sequence

 

For more JalviewLite examples, follow the links below.

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+ Examples aren't working ?
Try the unsigned applet demos +
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Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar +

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JalviewLite Button Examples

+Try out JalviewLite by pressing one of the buttons below.
+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

+

 

+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + +Displays a features file on the alignment
+ + + + + + + + + + + + + + + +Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence
+

+

RF00031 RFAM Alignment with per sequence secondary + structure

+

+ + + + + +
+ + + + + + + + + +Displays an RFAM RNA fold family with + secondary structure annotation
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+ + + + +
+ +
+ + + +