X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=a101d65349808e2088bcf63ade437cec2ffdd66c;hb=689acdc2cd646be253e48413f1fc544824294bf5;hp=44361f94b85906e0e26fa909e4c0be961516dcfd;hpb=f1aa6cadf63d2368d6c9d87c6bc53de2805fd104;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html old mode 100755 new mode 100644 index 44361f9..a101d65 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,104 +1,196 @@ -
-
|
- Jalview comes in two distinct flavours. The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets. -For more information on how to use the applet in your - website, see full list of applet - parameters. -Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser. - Ferredoxins, chloroplast precursor related UniRef50
- cluster
- |
|
-
-
|
-
-
|
-
|
|
For more JalviewLite examples, follow the links below.
-Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar
+
+
+
+ + | +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment. | +
+ | +Displays a features file on the alignment | +
+ | +Associates PDB file 1GAQ with sequence + FER1_MAIZE | +
+ | +Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence | +
+
+ | +Displays an RFAM RNA fold family with + secondary structure annotation | +
+
+ + | +Displays a split window view of protein and its related cDNA | +