X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=a6d61f8f8456eaf170743467e9f352dd473d989b;hb=refs%2Fheads%2FWIP_fix_JAL-1423;hp=d67c8b15267f5e0a1bcdec4e43ae1aa98777e576;hpb=ef4e1e730bcd4a6ae92f422f8877fd4026cbde3b;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html index d67c8b1..a6d61f8 100755 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,134 +1,330 @@ - + + + + Jalview - Applets -
       
-

Jalview comes in two distinct flavours.
-
- The main application allows connection to multiple web services provided - at the University of Dundee as well as a host of additional useful features - such as printing, making images from your alignment and annotating your - alignment. You need to download and install this software.

-

The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets.

-

For more information on how to use the applet in your - website, see full list of applet - parameters.

-

Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

-

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

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-
- - - - -
- - - - -
- - - - - - - - - User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - Displays a features file on the alignment
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - Associates PDB file 1GAQ with sequence FER1_MAIZE
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- - - - -
- - - - -
- - - - - - - - - - - - - - - - - Displays a Multiple Sequence Alignment Based - JNet Prediction for a Sequence

 

For more JalviewLite examples, follow the links below.

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JalviewLite is a web based version of Jalview, which runs as a + Java applet in or on a web page. It's one of the easiest ways of + providing an interactive display for precalculated alignments, + features and annotations files. It lacks some functionality + available in the Jalview Desktop, however, such as making images, + saving files, and running web service jobs. This is mostly due to + security restrictions imposed on applets.

+

+ Try out JalviewLite by pressing one of the buttons below. For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

+
+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + Displays a features file on the alignment
+ + + + + + + + + + + + + + + + Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence
+

+

RF00031 RFAM Alignment with per sequence secondary + structure

+

+ + + + + +
+ + + + + + + + + + + + Displays an RFAM RNA fold family with + secondary structure annotation
+
+
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+ + + + +