X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=a83270c356392a2ff9af6c524d50770786a8f7a5;hb=3bdff434d35a6713ebbdc94c9e1fedab7aee1b81;hp=fcbcb9a1ce609771461b39c9c98cc7dc7d84c64e;hpb=2f72ea86efd420d86a3fee3f70b0bb54049c8fd9;p=jalview.git

diff --git a/examples/applets.html b/examples/applets.html
index fcbcb9a..a83270c 100755
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -185,7 +185,14 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
 	<applet
    code="jalview.bin.JalviewLite" width="140" height="35"
    archive="jalviewApplet.jar">
-<param name="file" value="uniref50.fa"/><param name="treeFile" value="ferredoxin.nw"/><param name="userDefinedColour" value="C=yellow; R,K,H=FF5555; D,E=5555FF"/><param name="sortByTree" value="True"/><param name="showSequenceLogo" value="true"/><param name="showGroupConsensus" value="true"/><param name="showFullId" value="false"/>
+<param name="permissions" value="sandbox"/>
+<param name="file" value="uniref50.fa"/>
+<param name="treeFile" value="ferredoxin.nw"/>
+<param name="userDefinedColour" value="C=yellow; R,K,H=FF5555; D,E=5555FF"/>
+<param name="sortByTree" value="True"/>
+<param name="showSequenceLogo" value="true"/>
+<param name="showGroupConsensus" value="true"/>
+<param name="showFullId" value="false"/>
    <param name="linkLabel_1" value="Uniprot"/>
    <param name="linkUrl_1"
      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
@@ -204,7 +211,15 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
       <td width="10%" valign="center"><applet
    code="jalview.bin.JalviewLite" width="140" height="35"
    archive="jalviewApplet.jar">
-<param name="file" value="uniref50.fa"/><param name="features" value="exampleFeatures.txt"/><param name="showFullId" value="false"/><param name="windowHeight" value="500"/><param name="windowWidth" value="650"/><param name="showFeatureSettings" value="true"/><param name="wrap" value="true"/><param name="showAnnotation" value="false"/>
+<param name="permissions" value="sandbox"/>
+<param name="file" value="uniref50.fa"/>
+<param name="features" value="exampleFeatures.txt"/>
+<param name="showFullId" value="false"/>
+<param name="windowHeight" value="500"/>
+<param name="windowWidth" value="650"/>
+<param name="showFeatureSettings" value="true"/>
+<param name="wrap" value="true"/>
+<param name="showAnnotation" value="false"/>
    <param name="linkLabel_1" value="Uniprot"/>
    <param name="linkUrl_1"
      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
@@ -221,7 +236,14 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
       <td width="10%" valign="center"><applet
    code="jalview.bin.JalviewLite" width="140" height="35"
    archive="jalviewApplet.jar,JmolApplet-12.2.4.jar">
-<param name="file" value="uniref50.fa"/><param name="showFullId" value="false"/><param name="windowHeight" value="500"/><param name="windowWidth" value="650"/><param name="wrap" value="true"/><param name="showAnnotation" value="false"/><param name="defaultColour" value="Strand Propensity"/>
+<param name="permissions" value="sandbox"/>
+<param name="file" value="uniref50.fa"/>
+<param name="showFullId" value="false"/>
+<param name="windowHeight" value="500"/>
+<param name="windowWidth" value="650"/>
+<param name="wrap" value="true"/>
+<param name="showAnnotation" value="false"/>
+<param name="defaultColour" value="Strand Propensity"/>
    <param name="linkLabel_1" value="Uniprot"/>
    <param name="linkUrl_1"
      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
@@ -239,7 +261,13 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
       <td width="10%" valign="center"><applet
    code="jalview.bin.JalviewLite" width="140" height="35"
    archive="jalviewApplet.jar">
-<param name="file" value="jpred_msa.fasta"/><param name="showFullId" value="false"/><param name="windowHeight" value="515"/><param name="windowWidth" value="650"/><param name="showAnnotation" value="true"/><param name="defaultColour" value="Clustal"/>
+<param name="permissions" value="sandbox"/>
+<param name="file" value="jpred_msa.fasta"/>
+<param name="showFullId" value="false"/>
+<param name="windowHeight" value="515"/>
+<param name="windowWidth" value="650"/>
+<param name="showAnnotation" value="true"/>
+<param name="defaultColour" value="Clustal"/>
    <param name="linkLabel_1" value="Uniprot"/>
    <param name="linkUrl_1"
      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
@@ -263,7 +291,13 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
       <td width="10%" valign="center"><applet
    code="jalview.bin.JalviewLite" width="140" height="35"
    archive="jalviewApplet.jar">
-<param name="file" value="RF00031_folded.stk"/><param name="showFullId" value="false"/><param name="windowHeight" value="515"/><param name="windowWidth" value="650"/><param name="showAnnotation" value="true"/><param name="defaultColour" value="Purine/Pyrimidine"/>
+<param name="permissions" value="sandbox"/>
+<param name="file" value="RF00031_folded.stk"/>
+<param name="showFullId" value="false"/>
+<param name="windowHeight" value="515"/>
+<param name="windowWidth" value="650"/>
+<param name="showAnnotation" value="true"/>
+<param name="defaultColour" value="Purine/Pyrimidine"/>
    <param name="APPLICATION_URL"
      value="http://www.jalview.org/services/launchApp"/>
 </applet>