X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=b789672812241dc3f9bdef1ed1ca327dab02dab2;hb=02f8e0098609a768e6a1a21c5c2928f81b5bf299;hp=2af2591c62f22dfb6bd57916526265fec0e81f5b;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html old mode 100755 new mode 100644 index 2af2591..b789672 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,7 +1,6 @@ - - - - -Jalview - Applets - - - - - - + - - - -
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+

JalviewLite Button Examples

+Try out JalviewLite by pressing one of the buttons below. + View the source for the examples below here (If the link doesn't work on your browser try going to this page and viewing the page source manually).
+ For more information on how to use the applet in your website, see the applet deployment,applet parameters, and other documentation in the links to the left.

+

 

+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+
- + + + + + + + + + + + + + +
        + + + + + + + + + + + + + + + +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + +Displays a features file on the alignment
+ + + + + + + + + + + + + + + + +Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JPred Prediction for a Sequence
- - - - +

+

RF00031 RFAM Alignment with per sequence secondary + structure

+

+
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Jalview comes in two distinct flavours.
-
- The main application allows connection to multiple web services provided - at the University of Dundee as well as a host of additional useful features - such as printing, making images from your alignment and annotating your - alignment. You need to download and install this software.

-

The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets.

-

For more information on how to use the applet in your - website, see full list of applet - parameters.

-

Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

-

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

-
-
- - - - -
- - - - -
- - - - - - - - - - - - - - User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - Displays a features file on the alignment
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - - Associates PDB file 1GAQ with sequence FER1_MAIZE
-

 

- - - - -
- - - - -
- - - - - - - - - - - - - - - - - Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence
-

 

- - - - -
- - - - -
- - - - - - - - - - - - Displays an RFAM RNA fold family with secondary structure annotation
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-

 

-

For more JalviewLite examples, follow the links below. -

-
+ + + + +
+ + + + + + + + + +Displays an RFAM RNA fold family with + secondary structure annotation
+

+

Linked Protein and cDNA alignments for a family of Steroid Receptors

+

+ + + +
+ + + + + + + + + + + + + + + +Displays a split window view showing aligned protein + and a reconstructed cDNA alignment.
Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop).
Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 +
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