JalviewLite is a web based version of Jalview, which runs as a - Java applet in or on a web page. It's one of the easiest ways of - providing an interactive display for precalculated alignments, - features and annotations files. It lacks some functionality - available in the Jalview Desktop, however, such as making images, - saving files, and running web service jobs. This is mostly due to - security restrictions imposed on applets.
-
- For more information on how to use the applet in your website, see full list of
- applet
- Pressing one of the buttons below will load up JalviewLite,
- a cut down version parameters.
-
-
Ferredoxins, chloroplast precursor related UniRef50 + + +
+
JalviewLite Button Examples
+Try out JalviewLite by pressing one of the buttons below. + View the source for the examples below here (If the link doesn't work on your browser try going to this page and viewing the page source manually).+ For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left. +
+
Ferredoxins, chloroplast precursor related UniRef50 cluster
-(15 sequences x 150 residues) - -
+ |
+ + | User Defined Colours, loads an associated - Newick format tree file which is used to sort the alignment, and - group consensus and sequence logos are shown below the alignment. | -
+ code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + | Displays a features file on the alignment | -
+ code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + + | Associates PDB file 1GAQ with sequence - FER1_MAIZE | -
- | Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence | -
-
RF00031 RFAM Alignment with per seqeunce secondary - structure
- -+ code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + | Displays a Multiple Sequence Alignment + Based JPred Prediction for a Sequence | +
+
RF00031 RFAM Alignment with per sequence secondary + structure
+ ++ | Displays an RFAM RNA fold family with - secondary structure annotation | -
+
Linked Protein and cDNA alignments for a family of Steroid Receptors
+ ++ + | +Displays a split window view showing aligned protein
+ and a reconstructed cDNA alignment. Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop). Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 + |
+