X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=b789672812241dc3f9bdef1ed1ca327dab02dab2;hb=282aa9129a74235dc8d6c22b123d51eb1abd2f55;hp=05a50ae215da273d60214c31021ecda16e0d454b;hpb=2d194c0fb039def421fae69cb997fe88080b0df7;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html old mode 100755 new mode 100644 index 05a50ae..b789672 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,184 +1,37 @@ - - - JalviewLite Examples - - - - - - - - - - - - - - - - - - - - - - - -
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- + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. +--> + + + -
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- Examples aren't working ?
Try the unsigned applet demos -
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Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar -

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-

JalviewLite Button Examples

-Try out JalviewLite by pressing one of the buttons below.
- For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

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-

+Try out JalviewLite by pressing one of the buttons below. + View the source for the examples below here (If the link doesn't work on your browser try going to this page and viewing the page source manually).
+ For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left.

+

 

+

Ferredoxins, chloroplast precursor related UniRef50 cluster


(15 sequences x 150 residues) @@ -186,26 +39,23 @@ Try out JalviewLite by pressing one of the buttons below.
+ Based JPred Prediction for a Sequence
- - - - - - - - - - - - - - - + + + + + + + + + + + + + + + User Defined Colours, loads an associated Newick format tree file which is used to sort the alignment, and @@ -214,7 +64,7 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> @@ -239,13 +89,14 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + @@ -265,9 +116,10 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + @@ -284,7 +136,7 @@ Try out JalviewLite by pressing one of the buttons below.
 		Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence

@@ -295,7 +147,7 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> @@ -311,30 +163,38 @@ Try out JalviewLite by pressing one of the buttons below.
secondary structure annotation - - - - - - - - - - - - +

+

Linked Protein and cDNA alignments for a family of Steroid Receptors

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+ + + + + +
+ + + + + + + + + + + + + + + +Displays a split window view showing aligned protein + and a reconstructed cDNA alignment.
Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop).
Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 +