X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=b789672812241dc3f9bdef1ed1ca327dab02dab2;hb=282aa9129a74235dc8d6c22b123d51eb1abd2f55;hp=a57efb7d6ae72da88555a4f1732476c617945a39;hpb=b57c603c7d837e70f30a8ce7f4a1f0bb67167fb9;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html old mode 100755 new mode 100644 index a57efb7..b789672 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,182 +1,35 @@ - - - JalviewLite Examples - - - - - - - - - - - - - - - - - - - - - - - -
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- + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. +--> + + + -
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- Examples aren't working ?
Try the unsigned applet demos -
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-

Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar -

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-

JalviewLite Button Examples

-Try out JalviewLite by pressing one of the buttons below.
- For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

+Try out JalviewLite by pressing one of the buttons below. + View the source for the examples below here (If the link doesn't work on your browser try going to this page and viewing the page source manually).
+ For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left.

 

Ferredoxins, chloroplast precursor related UniRef50 @@ -186,26 +39,23 @@ Try out JalviewLite by pressing one of the buttons below.
+ Based JPred Prediction for a Sequence
- - - - - - - - - - - - - - - + + + + + + + + + + + + + + + User Defined Colours, loads an associated Newick format tree file which is used to sort the alignment, and @@ -214,7 +64,7 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> @@ -239,13 +89,14 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + @@ -265,9 +116,10 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + @@ -284,7 +136,7 @@ Try out JalviewLite by pressing one of the buttons below.
 		Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence

@@ -295,7 +147,7 @@ Try out JalviewLite by pressing one of the buttons below.
+ archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> @@ -311,30 +163,38 @@ Try out JalviewLite by pressing one of the buttons below.
secondary structure annotation - - - - - - - - - - - - +

+

Linked Protein and cDNA alignments for a family of Steroid Receptors

+

+ + + + + +
+ + + + + + + + + + + + + + + +Displays a split window view showing aligned protein + and a reconstructed cDNA alignment.
Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop).
Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 +