JalviewLite is a web based version of Jalview, which runs as a - Java applet in or on a web page. It's one of the easiest ways of - providing an interactive display for precalculated alignments, - features and annotations files. It lacks some functionality - available in the Jalview Desktop, however, such as making images, - saving files, and running web service jobs. This is mostly due to - security restrictions imposed on applets.
-- Try out JalviewLite by pressing one of the buttons below. For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.
-
-
+ For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left. +
-
Ferredoxins, chloroplast precursor related UniRef50 + + +
+
JalviewLite Button Examples
+Try out JalviewLite by pressing one of the buttons below. + View the source for the examples below here (If the link doesn't work on your browser try going to this page and viewing the page source manually).+ For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left. +
+
(15 sequences x 150 residues) - -
-
+
+
+ Displays a Multiple Sequence Alignment
+ Based JPred Prediction for a Sequence
+
+
+
-
+
+
+
Ferredoxins, chloroplast precursor related UniRef50 cluster
-(15 sequences x 150 residues) - -
| + |
| + + | User Defined Colours, loads an associated - Newick format tree file which is used to sort the alignment, and - group consensus and sequence logos are shown below the alignment. | -
| + code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + | Displays a features file on the alignment | -
| + code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + + + + + + + + | Associates PDB file 1GAQ with sequence - FER1_MAIZE | -
| - | Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence | -
+ FER1_MAIZE +
RF00031 RFAM Alignment with per sequence secondary - structure
- -| + code="jalview.bin.JalviewLite" width="140" height="35" + archive="jalviewApplet.jar,JmolApplet-14.6.4_2016.10.26.jar,java-json.jar,json_simple-1.1.jar"> + + + + + + + + + + | Displays an RFAM RNA fold family with - secondary structure annotation | -
+
Linked Protein and cDNA alignments for a family of Steroid Receptors
+ +| + + | +Displays a split window view showing aligned protein
+ and a reconstructed cDNA alignment. Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop). Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 + |
+