X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=b789672812241dc3f9bdef1ed1ca327dab02dab2;hb=9603ccdf9190d748728b4fb2fdd14533ca4e1a38;hp=eeb0d8725bab74226bfbbe07977ba58572f3a86d;hpb=6fa12685f5a274baad0f65db6241de29b7e5dbbf;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html old mode 100755 new mode 100644 index eeb0d87..b789672 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,137 +1,200 @@ -
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- Jalview comes in two distinct flavours. The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets. -For more information on how to use the applet in your - website, see full list of applet - parameters. -Pressing one of the buttons below will load up a cut down version - of Jalview, which runs within your web browser. - Ferredoxins, chloroplast precursor related UniRef50
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+ + | +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment. | +
+ | +Displays a features file on the alignment | +
+ | +Associates PDB file 1GAQ with sequence + FER1_MAIZE | +
+ | +Displays a Multiple Sequence Alignment + Based JPred Prediction for a Sequence | +
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+ | +Displays an RFAM RNA fold family with + secondary structure annotation | +
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+ + | +Displays a split window view showing aligned protein
+ and a reconstructed cDNA alignment. Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop). Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 + |
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