JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive
- display for precalculated alignments, features and annotations files.
- It lacks some functionality available in the Jalview Desktop, however, such
- as making images, saving files, and running web service jobs. This is mostly due to security
- restrictions imposed on applets.
Pressing one of the buttons below will load up JalviewLite, a cut down version
- of Jalview, which runs within your web browser.
-
Ferredoxins, chloroplast precursor related UniRef50
- cluster
- (15 sequences x 150 residues)
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User Defined Colours, loads an associated Newick
- format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
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Displays a features file on the alignment
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Associates PDB file 1GAQ with sequence FER1_MAIZE
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Displays a Multiple Sequence Alignment
- Based JNet Prediction for a Sequence
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Displays an RFAM RNA fold family with secondary structure annotation
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For more JalviewLite examples, follow the links below.
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+Try out JalviewLite by pressing one of the buttons below.
+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.
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+
+
Ferredoxins, chloroplast precursor related UniRef50
+ cluster
+ (15 sequences x 150 residues)
+
+
+
+
+
+
+
User Defined Colours, loads an associated
+ Newick format tree file which is used to sort the alignment, and
+ group consensus and sequence logos are shown below the alignment.
+
+
+
+
+
Displays a features file on the alignment
+
+
+
+
+
Associates PDB file 1GAQ with sequence
+ FER1_MAIZE
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+
Displays a Multiple Sequence Alignment
+ Based JNet Prediction for a Sequence
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+
RF00031 RFAM Alignment with per sequence secondary
+ structure
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Displays an RFAM RNA fold family with
+ secondary structure annotation
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Linked Protein and cDNA alignments for a family of Steroid Receptors
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Displays a split window view showing aligned protein
+ and a reconstructed cDNA alignment. Proteins were aligned with Muscle (version 3.8.31,
+ via the Jalview Desktop). Data retrieved from Uniprot and
+ ENA, after Thornton, Need and Crews, Science 19
+ September 2003: 301 (5640), 1714-1717
+