Jalview - Applets

JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive - display for precalculated alignments, features and annotations files. - It lacks some functionality available in the Jalview Desktop, however, such - as making images, saving files, and running web service jobs. This is mostly due to security - restrictions imposed on applets.

For more information on how to use the applet in your - website, see full list of applet - parameters.

Pressing one of the buttons below will load up JalviewLite, a cut down version - of Jalview, which runs within your web browser.

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

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User Defined Colours, loads an associated Newick - format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.

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Displays a features file on the alignment

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Associates PDB file 1GAQ with sequence FER1_MAIZE

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Displays a Multiple Sequence Alignment - Based JNet Prediction for a Sequence

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Displays an RFAM RNA fold family with secondary structure annotation

JalviewLite Button Examples

applet parameters

Ferredoxins, chloroplast precursor related UniRef50 + cluster

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(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +

+ + + + + + + + + + + + + + + +	User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + +	Displays a features file on the alignment
+ + + + + + + + + + + + + + + + +	Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + +	Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence

RF00031 RFAM Alignment with per sequence secondary + structure

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Displays an RFAM RNA fold family with + secondary structure annotation

Linked Protein and cDNA alignments for a family of Steroid Receptors

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Displays a split window view showing aligned protein + and a reconstructed cDNA alignment.
Proteins were aligned with Muscle (version 3.8.31, + via the Jalview Desktop).
Data retrieved from Uniprot and + ENA, after Thornton, Need and Crews, Science 19 + September 2003: 301 (5640), 1714-1717 +

Ferredoxins, chloroplast precursor related UniRef50 - cluster - (15 sequences x 150 residues)

JalviewLite Button Examples

Ferredoxins, chloroplast precursor related UniRef50 + cluster

RF00031 RFAM Alignment with per sequence secondary + structure

Linked Protein and cDNA alignments for a family of Steroid Receptors

Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)