X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=df3de4d3ed2dd204bc6cf6fb44512f707bf59e44;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=eeb0d8725bab74226bfbbe07977ba58572f3a86d;hpb=6fa12685f5a274baad0f65db6241de29b7e5dbbf;p=jalview.git diff --git a/examples/applets.html b/examples/applets.html index eeb0d87..df3de4d 100755 --- a/examples/applets.html +++ b/examples/applets.html @@ -1,137 +1,341 @@ - -Jalview - Applets -
       
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Jalview comes in two distinct flavours.
-
- The main application allows connection to multiple web services provided - at the University of Dundee as well as a host of additional useful features - such as printing, making images from your alignment and annotating your - alignment. You need to download and install this software.

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The applet version runs in web browsers and is a useful interactive - display for precalculated alignments, features and annotations files. - It does not have the full functionality of the main application, such - as making images, saving files, running web service jobs due to security - restrictions imposed on applets.

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For more information on how to use the applet in your - website, see full list of applet - parameters.

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Pressing one of the buttons below will load up a cut down version - of Jalview, which runs within your web browser.

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Ferredoxins, chloroplast precursor related UniRef50 - cluster
- (15 sequences x 150 residues)

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- - - - - - - - - - - User Defined Colours, loads an associated Newick - format tree file
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- - - - - - - - - - - - - - - Displays a features file on the alignment
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- - - - - - - - - - - - - - - Associates PDB file 1GAQ with sequence FER1_MAIZE
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- - - - - - - - - - - - - - - - - Displays a Multiple Sequence Alignment Based - JNet Prediction for a Sequence
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\ No newline at end of file + + + + JalviewLite Examples + + + + + + + + + + + + + + + + + + + + + + + +
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+ Examples aren't working ?
Try the unsigned applet demos +
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Quick Links to jars for example:
jalviewApplet.jar and JmolApplet.jar +

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JalviewLite Button Examples

+Try out JalviewLite by pressing one of the buttons below.
+ For more information on how to use the applet in your website, see the applet parameters and other documentation in the links to the left.

+

 

+

+

Ferredoxins, chloroplast precursor related UniRef50 + cluster

+
(15 sequences x 150 residues) +

+ + + + + + + + + + + + + + + + + +
+ + + + + + + + + + + + + + + +User Defined Colours, loads an associated + Newick format tree file which is used to sort the alignment, and + group consensus and sequence logos are shown below the alignment.
+ + + + + + + + + + + + + + + +Displays a features file on the alignment
+ + + + + + + + + + + + + + + +Associates PDB file 1GAQ with sequence + FER1_MAIZE
+ + + + + + + + + + + + + + Displays a Multiple Sequence Alignment + Based JNet Prediction for a Sequence
+

+

RF00031 RFAM Alignment with per sequence secondary + structure

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+ + + + + +
+ + + + + + + + + +Displays an RFAM RNA fold family with + secondary structure annotation
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