X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fapplets.html;h=e3c71badca4bb6fe2f5b915155bb89a00300783d;hb=0e1692ebb479ee94f412079c50be4e0222bd1776;hp=21ed203e0478ef3020aa0853d950b77efe34f525;hpb=b72f4090d5f4b06bbe6c9bace36bed652a350b82;p=jalview.git

diff --git a/examples/applets.html b/examples/applets.html
index 21ed203..e3c71ba 100755
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -29,19 +29,17 @@
                     <td width="100"> <applet code="jalview.bin.JalviewLite"
 			       	width="140" height="35"
 			       	archive="jalviewApplet.jar">
-                        <param name="file" value="uniref50.fa">
-                        <param name="treeFile" value="ferredoxin.nw">
+						<param name="file" value="uniref50.fa">
                        <param name="treeFile" value="ferredoxin.nw">
                         <param name="userDefinedColour" value="C=yellow; R,K,H=FF5555; D,E=5555FF">
                         <param name="showFullId" value="false">
-                        <param name="RGB"  value="F2F2FF">
-                        <param name="linkLabel_1" value="SRS">
+                        <param name="RGB"  value="F2F2FF">
                        <param name="sortByTree" value="True">
                        <param name="showSequenceLogo" value="true">
                        <param name="showGroupConsensus" value="true">
                        <param name="linkLabel_1" value="SRS">
                         <param name="linkUrl_1" value="http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2">
                         <param name="linkLabel_2" value="Uniprot">
                         <param name="linkUrl_2" value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
 						<param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp">
                       </applet></td>
                     <td width="165">User Defined Colours, loads an associated Newick
-                      format tree file</td>
+                      format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.</td>
                   </tr>
                 </table></td>
             </tr>
@@ -74,14 +72,14 @@
                 </table></td>
             </tr>
           </table>
-          <p>&nbsp;</p>
+            <p>&nbsp;</p>
           <table width="300" border="1" cellspacing="0" cellpadding="0">
             <tr>
               <td><table width="300" border="0" cellspacing="0" cellpadding="0">
                   <tr>
                     <td width="100"> <applet code="jalview.bin.JalviewLite"
 			       	width="140" height="35"
-			       	archive="jalviewApplet.jar,JmolApplet-12.1.13.jar">
+			       	archive="jalviewApplet.jar,JmolApplet-12.2.4.jar">
                         <param name="file" value="uniref50.fa">
                        <!-- <param name="debug" value="true">
                         -->
                        <param name="defaultColour" value="Strand Propensity">
                         <param name="wrap" value="true">
@@ -132,6 +130,5 @@
                   </tr>
                 </table></td>
             </tr>
-          </table>
          
-        </div>
        <p>&nbsp;</p>
          <p>For more JalviewLite examples, follow the links below.
          <ul>
          <li><a href="embedded.html">JalviewLite embedded in the web page</a></li>
          <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>
          <li><a href="linkedapplets_ng.html">use Javascript to make two jalviewLite instances talk to each other</a></li>
          <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page.</a></li>
          </ul>
+          </table>
        </div>
        <p>&nbsp;</p>
          <p>For more JalviewLite examples, follow the links below.
          <ul>
          <li><a href="embedded.html">JalviewLite embedded in the web page</a></li>
          <li><a href="formComplete.html">use Javascript to control and get data from JalviewLite</a></li>
          <li><a href="linkedapplets_ng.html">use Javascript to make two jalviewLite instances talk to each other</a></li>
          <li><a href="embeddedWJmol.html">configure JalviewLite to talk to a Jmol applet on the page.</a></li>
          </ul>
         <!-- InstanceEndEditable --></td>
    </tr>
  </table>
</div>
</body>
<!-- InstanceEnd --></html>
\ No newline at end of file