X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fbiojson-doc%2Flib%2Fmarked.js;fp=examples%2Fbiojson-doc%2Flib%2Fmarked.js;h=da025bdce4e4214b26281e018518394111ea3b61;hb=1ba05544b34253204ef6410017a179c31fe5e23d;hp=0000000000000000000000000000000000000000;hpb=f8ce78dc02ce9d96129fcc4882749f43869928ff;p=jalview.git diff --git a/examples/biojson-doc/lib/marked.js b/examples/biojson-doc/lib/marked.js new file mode 100755 index 0000000..da025bd --- /dev/null +++ b/examples/biojson-doc/lib/marked.js @@ -0,0 +1,1194 @@ +/* + * Copyright 2013 Laurent Bovet + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ + +;(function() { + + /** + * Block-Level Grammar + */ + + var block = { + newline: /^\n+/, + code: /^( {4}[^\n]+\n*)+/, + fences: noop, + hr: /^( *[-*_]){3,} *(?:\n+|$)/, + heading: /^ *(#{1,6}) *([^\n]+?) *#* *(?:\n+|$)/, + nptable: noop, + lheading: /^([^\n]+)\n *(=|-){2,} *(?:\n+|$)/, + blockquote: /^( *>[^\n]+(\n[^\n]+)*\n*)+/, + list: /^( *)(bull) [\s\S]+?(?:hr|\n{2,}(?! )(?!\1bull )\n*|\s*$)/, + html: /^ *(?:comment|closed|closing) *(?:\n{2,}|\s*$)/, + def: /^ *\[([^\]]+)\]: *]+)>?(?: +["(]([^\n]+)[")])? *(?:\n+|$)/, + table: noop, + paragraph: /^((?:[^\n]+\n?(?!hr|heading|lheading|blockquote|tag|def))+)\n*/, + text: /^[^\n]+/ + }; + + block.bullet = /(?:[*+-]|\d+\.)/; + block.item = /^( *)(bull) [^\n]*(?:\n(?!\1bull )[^\n]*)*/; + block.item = replace(block.item, 'gm') + (/bull/g, block.bullet) + (); + + block.list = replace(block.list) + (/bull/g, block.bullet) + ('hr', /\n+(?=(?: *[-*_]){3,} *(?:\n+|$))/) + (); + + block._tag = '(?!(?:' + + 'a|em|strong|small|s|cite|q|dfn|abbr|data|time|code' + + '|var|samp|kbd|sub|sup|i|b|u|mark|ruby|rt|rp|bdi|bdo' + + '|span|br|wbr|ins|del|img)\\b)\\w+(?!:/|@)\\b'; + + block.html = replace(block.html) + ('comment', //) + ('closed', /<(tag)[\s\S]+?<\/\1>/) + ('closing', /])*?>/) + (/tag/g, block._tag) + (); + + block.paragraph = replace(block.paragraph) + ('hr', block.hr) + ('heading', block.heading) + ('lheading', block.lheading) + ('blockquote', block.blockquote) + ('tag', '<' + block._tag) + ('def', block.def) + (); + + /** + * Normal Block Grammar + */ + + block.normal = merge({}, block); + + /** + * GFM Block Grammar + */ + + block.gfm = merge({}, block.normal, { + fences: /^ *(`{3,}|~{3,}) *(\S+)? *\n([\s\S]+?)\s*\1 *(?:\n+|$)/, + paragraph: /^/ + }); + + block.gfm.paragraph = replace(block.paragraph) + ('(?!', '(?!' + + block.gfm.fences.source.replace('\\1', '\\2') + '|' + + block.list.source.replace('\\1', '\\3') + '|') + (); + + /** + * GFM + Tables Block Grammar + */ + + block.tables = merge({}, block.gfm, { + nptable: /^ *(\S.*\|.*)\n *([-:]+ *\|[-| :]*)\n((?:.*\|.*(?:\n|$))*)\n*/, + table: /^ *\|(.+)\n *\|( *[-:]+[-| :]*)\n((?: *\|.*(?:\n|$))*)\n*/ + }); + + /** + * Block Lexer + */ + + function Lexer(options) { + this.tokens = []; + this.tokens.links = {}; + this.options = options || marked.defaults; + this.rules = block.normal; + + if (this.options.gfm) { + if (this.options.tables) { + this.rules = block.tables; + } else { + this.rules = block.gfm; + } + } + } + + /** + * Expose Block Rules + */ + + Lexer.rules = block; + + /** + * Static Lex Method + */ + + Lexer.lex = function(src, options) { + var lexer = new Lexer(options); + return lexer.lex(src); + }; + + /** + * Preprocessing + */ + + Lexer.prototype.lex = function(src) { + src = src + .replace(/\r\n|\r/g, '\n') + .replace(/\t/g, ' ') + .replace(/\u00a0/g, ' ') + .replace(/\u2424/g, '\n'); + + return this.token(src, true); + }; + + /** + * Lexing + */ + + Lexer.prototype.token = function(src, top) { + var src = src.replace(/^ +$/gm, '') + , next + , loose + , cap + , bull + , b + , item + , space + , i + , l; + + while (src) { + // newline + if (cap = this.rules.newline.exec(src)) { + src = src.substring(cap[0].length); + if (cap[0].length > 1) { + this.tokens.push({ + type: 'space' + }); + } + } + + // code + if (cap = this.rules.code.exec(src)) { + src = src.substring(cap[0].length); + cap = cap[0].replace(/^ {4}/gm, ''); + this.tokens.push({ + type: 'code', + text: !this.options.pedantic + ? cap.replace(/\n+$/, '') + : cap + }); + continue; + } + + // fences (gfm) + if (cap = this.rules.fences.exec(src)) { + src = src.substring(cap[0].length); + this.tokens.push({ + type: 'code', + lang: cap[2], + text: cap[3] + }); + continue; + } + + // heading + if (cap = this.rules.heading.exec(src)) { + src = src.substring(cap[0].length); + this.tokens.push({ + type: 'heading', + depth: cap[1].length, + text: cap[2] + }); + continue; + } + + // table no leading pipe (gfm) + if (top && (cap = this.rules.nptable.exec(src))) { + src = src.substring(cap[0].length); + + item = { + type: 'table', + header: cap[1].replace(/^ *| *\| *$/g, '').split(/ *\| */), + align: cap[2].replace(/^ *|\| *$/g, '').split(/ *\| */), + cells: cap[3].replace(/\n$/, '').split('\n') + }; + + for (i = 0; i < item.align.length; i++) { + if (/^ *-+: *$/.test(item.align[i])) { + item.align[i] = 'right'; + } else if (/^ *:-+: *$/.test(item.align[i])) { + item.align[i] = 'center'; + } else if (/^ *:-+ *$/.test(item.align[i])) { + item.align[i] = 'left'; + } else { + item.align[i] = null; + } + } + + for (i = 0; i < item.cells.length; i++) { + item.cells[i] = item.cells[i].split(/ *\| */); + } + + this.tokens.push(item); + + continue; + } + + // lheading + if (cap = this.rules.lheading.exec(src)) { + src = src.substring(cap[0].length); + this.tokens.push({ + type: 'heading', + depth: cap[2] === '=' ? 1 : 2, + text: cap[1] + }); + continue; + } + + // hr + if (cap = this.rules.hr.exec(src)) { + src = src.substring(cap[0].length); + this.tokens.push({ + type: 'hr' + }); + continue; + } + + // blockquote + if (cap = this.rules.blockquote.exec(src)) { + src = src.substring(cap[0].length); + + this.tokens.push({ + type: 'blockquote_start' + }); + + cap = cap[0].replace(/^ *> ?/gm, ''); + + // Pass `top` to keep the current + // "toplevel" state. This is exactly + // how markdown.pl works. + this.token(cap, top); + + this.tokens.push({ + type: 'blockquote_end' + }); + + continue; + } + + // list + if (cap = this.rules.list.exec(src)) { + src = src.substring(cap[0].length); + bull = cap[2]; + + this.tokens.push({ + type: 'list_start', + ordered: bull.length > 1 + }); + + // Get each top-level item. + cap = cap[0].match(this.rules.item); + + next = false; + l = cap.length; + i = 0; + + for (; i < l; i++) { + item = cap[i]; + + // Remove the list item's bullet + // so it is seen as the next token. + space = item.length; + item = item.replace(/^ *([*+-]|\d+\.) +/, ''); + + // Outdent whatever the + // list item contains. Hacky. + if (~item.indexOf('\n ')) { + space -= item.length; + item = !this.options.pedantic + ? item.replace(new RegExp('^ {1,' + space + '}', 'gm'), '') + : item.replace(/^ {1,4}/gm, ''); + } + + // Determine whether the next list item belongs here. + // Backpedal if it does not belong in this list. + if (this.options.smartLists && i !== l - 1) { + b = block.bullet.exec(cap[i + 1])[0]; + if (bull !== b && !(bull.length > 1 && b.length > 1)) { + src = cap.slice(i + 1).join('\n') + src; + i = l - 1; + } + } + + // Determine whether item is loose or not. + // Use: /(^|\n)(?! )[^\n]+\n\n(?!\s*$)/ + // for discount behavior. + loose = next || /\n\n(?!\s*$)/.test(item); + if (i !== l - 1) { + next = item.charAt(item.length - 1) === '\n'; + if (!loose) loose = next; + } + + this.tokens.push({ + type: loose + ? 'loose_item_start' + : 'list_item_start' + }); + + // Recurse. + this.token(item, false); + + this.tokens.push({ + type: 'list_item_end' + }); + } + + this.tokens.push({ + type: 'list_end' + }); + + continue; + } + + // html + if (cap = this.rules.html.exec(src)) { + src = src.substring(cap[0].length); + this.tokens.push({ + type: this.options.sanitize + ? 'paragraph' + : 'html', + pre: cap[1] === 'pre' || cap[1] === 'script' || cap[1] === 'style', + text: cap[0] + }); + continue; + } + + // def + if (top && (cap = this.rules.def.exec(src))) { + src = src.substring(cap[0].length); + this.tokens.links[cap[1].toLowerCase()] = { + href: cap[2], + title: cap[3] + }; + continue; + } + + // table (gfm) + if (top && (cap = this.rules.table.exec(src))) { + src = src.substring(cap[0].length); + + item = { + type: 'table', + header: cap[1].replace(/^ *| *\| *$/g, '').split(/ *\| */), + align: cap[2].replace(/^ *|\| *$/g, '').split(/ *\| */), + cells: cap[3].replace(/(?: *\| *)?\n$/, '').split('\n') + }; + + for (i = 0; i < item.align.length; i++) { + if (/^ *-+: *$/.test(item.align[i])) { + item.align[i] = 'right'; + } else if (/^ *:-+: *$/.test(item.align[i])) { + item.align[i] = 'center'; + } else if (/^ *:-+ *$/.test(item.align[i])) { + item.align[i] = 'left'; + } else { + item.align[i] = null; + } + } + + for (i = 0; i < item.cells.length; i++) { + item.cells[i] = item.cells[i] + .replace(/^ *\| *| *\| *$/g, '') + .split(/ *\| */); + } + + this.tokens.push(item); + + continue; + } + + // top-level paragraph + if (top && (cap = this.rules.paragraph.exec(src))) { + src = src.substring(cap[0].length); + this.tokens.push({ + type: 'paragraph', + text: cap[1].charAt(cap[1].length - 1) === '\n' + ? cap[1].slice(0, -1) + : cap[1] + }); + continue; + } + + // text + if (cap = this.rules.text.exec(src)) { + // Top-level should never reach here. + src = src.substring(cap[0].length); + this.tokens.push({ + type: 'text', + text: cap[0] + }); + continue; + } + + if (src) { + throw new + Error('Infinite loop on byte: ' + src.charCodeAt(0)); + } + } + + return this.tokens; + }; + + /** + * Inline-Level Grammar + */ + + var inline = { + escape: /^\\([\\`*{}\[\]()#+\-.!_>])/, + autolink: /^<([^ >]+(@|:\/)[^ >]+)>/, + url: noop, + tag: /^|^<\/?\w+(?:"[^"]*"|'[^']*'|[^'">])*?>/, + link: /^!?\[(inside)\]\(href\)/, + reflink: /^!?\[(inside)\]\s*\[([^\]]*)\]/, + nolink: /^!?\[((?:\[[^\]]*\]|[^\[\]])*)\]/, + strong: /^__([\s\S]+?)__(?!_)|^\*\*([\s\S]+?)\*\*(?!\*)/, + em: /^\b_((?:__|[\s\S])+?)_\b|^\*((?:\*\*|[\s\S])+?)\*(?!\*)/, + code: /^(`+)\s*([\s\S]*?[^`])\s*\1(?!`)/, + br: /^ {2,}\n(?!\s*$)/, + del: noop, + text: /^[\s\S]+?(?=[\\?(?:\s+['"]([\s\S]*?)['"])?\s*/; + + inline.link = replace(inline.link) + ('inside', inline._inside) + ('href', inline._href) + (); + + inline.reflink = replace(inline.reflink) + ('inside', inline._inside) + (); + + /** + * Normal Inline Grammar + */ + + inline.normal = merge({}, inline); + + /** + * Pedantic Inline Grammar + */ + + inline.pedantic = merge({}, inline.normal, { + strong: /^__(?=\S)([\s\S]*?\S)__(?!_)|^\*\*(?=\S)([\s\S]*?\S)\*\*(?!\*)/, + em: /^_(?=\S)([\s\S]*?\S)_(?!_)|^\*(?=\S)([\s\S]*?\S)\*(?!\*)/ + }); + + /** + * GFM Inline Grammar + */ + + inline.gfm = merge({}, inline.normal, { + escape: replace(inline.escape)('])', '~|])')(), + url: /^(https?:\/\/[^\s<]+[^<.,:;"')\]\s])/, + del: /^~~(?=\S)([\s\S]*?\S)~~/, + text: replace(inline.text) + (']|', '~]|') + ('|', '|https?://|') + () + }); + + /** + * GFM + Line Breaks Inline Grammar + */ + + inline.breaks = merge({}, inline.gfm, { + br: replace(inline.br)('{2,}', '*')(), + text: replace(inline.gfm.text)('{2,}', '*')() + }); + + /** + * Inline Lexer & Compiler + */ + + function InlineLexer(links, options) { + this.options = options || marked.defaults; + this.links = links; + this.rules = inline.normal; + this.renderer = this.options.renderer || new Renderer; + + if (!this.links) { + throw new + Error('Tokens array requires a `links` property.'); + } + + if (this.options.gfm) { + if (this.options.breaks) { + this.rules = inline.breaks; + } else { + this.rules = inline.gfm; + } + } else if (this.options.pedantic) { + this.rules = inline.pedantic; + } + } + + /** + * Expose Inline Rules + */ + + InlineLexer.rules = inline; + + /** + * Static Lexing/Compiling Method + */ + + InlineLexer.output = function(src, links, options) { + var inline = new InlineLexer(links, options); + return inline.output(src); + }; + + /** + * Lexing/Compiling + */ + + InlineLexer.prototype.output = function(src) { + var out = '' + , link + , text + , href + , cap; + + while (src) { + // escape + if (cap = this.rules.escape.exec(src)) { + src = src.substring(cap[0].length); + out += cap[1]; + continue; + } + + // autolink + if (cap = this.rules.autolink.exec(src)) { + src = src.substring(cap[0].length); + if (cap[2] === '@') { + text = cap[1].charAt(6) === ':' + ? this.mangle(cap[1].substring(7)) + : this.mangle(cap[1]); + href = this.mangle('mailto:') + text; + } else { + text = escape(cap[1]); + href = text; + } + out += this.renderer.link(href, null, text); + continue; + } + + // url (gfm) + if (cap = this.rules.url.exec(src)) { + src = src.substring(cap[0].length); + text = escape(cap[1]); + href = text; + out += this.renderer.link(href, null, text); + continue; + } + + // tag + if (cap = this.rules.tag.exec(src)) { + src = src.substring(cap[0].length); + out += this.options.sanitize + ? escape(cap[0]) + : cap[0]; + continue; + } + + // link + if (cap = this.rules.link.exec(src)) { + src = src.substring(cap[0].length); + out += this.outputLink(cap, { + href: cap[2], + title: cap[3] + }); + continue; + } + + // reflink, nolink + if ((cap = this.rules.reflink.exec(src)) + || (cap = this.rules.nolink.exec(src))) { + src = src.substring(cap[0].length); + link = (cap[2] || cap[1]).replace(/\s+/g, ' '); + link = this.links[link.toLowerCase()]; + if (!link || !link.href) { + out += cap[0].charAt(0); + src = cap[0].substring(1) + src; + continue; + } + out += this.outputLink(cap, link); + continue; + } + + // strong + if (cap = this.rules.strong.exec(src)) { + src = src.substring(cap[0].length); + out += this.renderer.strong(this.output(cap[2] || cap[1])); + continue; + } + + // em + if (cap = this.rules.em.exec(src)) { + src = src.substring(cap[0].length); + out += this.renderer.em(this.output(cap[2] || cap[1])); + continue; + } + + // code + if (cap = this.rules.code.exec(src)) { + src = src.substring(cap[0].length); + out += this.renderer.codespan(escape(cap[2], true)); + continue; + } + + // br + if (cap = this.rules.br.exec(src)) { + src = src.substring(cap[0].length); + out += this.renderer.br(); + continue; + } + + // del (gfm) + if (cap = this.rules.del.exec(src)) { + src = src.substring(cap[0].length); + out += this.renderer.del(this.output(cap[1])); + continue; + } + + // text + if (cap = this.rules.text.exec(src)) { + src = src.substring(cap[0].length); + out += escape(this.smartypants(cap[0])); + continue; + } + + if (src) { + throw new + Error('Infinite loop on byte: ' + src.charCodeAt(0)); + } + } + + return out; + }; + + /** + * Compile Link + */ + + InlineLexer.prototype.outputLink = function(cap, link) { + var href = escape(link.href) + , title = link.title ? escape(link.title) : null; + + if (cap[0].charAt(0) !== '!') { + return this.renderer.link(href, title, this.output(cap[1])); + } else { + return this.renderer.image(href, title, escape(cap[1])); + } + }; + + /** + * Smartypants Transformations + */ + + InlineLexer.prototype.smartypants = function(text) { + if (!this.options.smartypants) return text; + return text + // em-dashes + .replace(/--/g, '\u2014') + // opening singles + .replace(/(^|[-\u2014/(\[{"\s])'/g, '$1\u2018') + // closing singles & apostrophes + .replace(/'/g, '\u2019') + // opening doubles + .replace(/(^|[-\u2014/(\[{\u2018\s])"/g, '$1\u201c') + // closing doubles + .replace(/"/g, '\u201d') + // ellipses + .replace(/\.{3}/g, '\u2026'); + }; + + /** + * Mangle Links + */ + + InlineLexer.prototype.mangle = function(text) { + var out = '' + , l = text.length + , i = 0 + , ch; + + for (; i < l; i++) { + ch = text.charCodeAt(i); + if (Math.random() > 0.5) { + ch = 'x' + ch.toString(16); + } + out += '&#' + ch + ';'; + } + + return out; + }; + + /** + * Renderer + */ + + function Renderer() {} + + Renderer.prototype.code = function(code, lang) { + if (!lang) { + return '
'
+                + escape(code, true)
+                + '\n
'; + } + + return '
'
+            + escape(code)
+            + '\n
\n'; + }; + + Renderer.prototype.blockquote = function(quote) { + return '
\n' + quote + '
\n'; + }; + + Renderer.prototype.html = function(html) { + return html; + }; + + Renderer.prototype.heading = function(text, level, raw, options) { + return '' + + text + + '\n'; + }; + + Renderer.prototype.hr = function() { + return '
\n'; + }; + + Renderer.prototype.list = function(body, ordered) { + var type = ordered ? 'ol' : 'ul'; + return '<' + type + '>\n' + body + '\n'; + }; + + Renderer.prototype.listitem = function(text) { + return '
  • ' + text + '
    • \n'; + }; + + Renderer.prototype.paragraph = function(text) { + return '

    ' + text + '

    \n'; + }; + + Renderer.prototype.table = function(header, body) { + return '\n' + + '\n' + + header + + '\n' + + '\n' + + body + + '\n' + + '
    \n'; + }; + + Renderer.prototype.tablerow = function(content) { + return '\n' + content + '\n'; + }; + + Renderer.prototype.tablecell = function(content, flags) { + var type = flags.header ? 'th' : 'td'; + var tag = flags.align + ? '<' + type + ' style="text-align:' + flags.align + '">' + : '<' + type + '>'; + return tag + content + '\n'; + }; + +// span level renderer + Renderer.prototype.strong = function(text) { + return '' + text + ''; + }; + + Renderer.prototype.em = function(text) { + return '' + text + ''; + }; + + Renderer.prototype.codespan = function(text) { + return '' + text + ''; + }; + + Renderer.prototype.br = function() { + return '
    '; + }; + + Renderer.prototype.del = function(text) { + return '' + text + ''; + }; + + Renderer.prototype.link = function(href, title, text) { + var out = ''; + return out; + }; + + Renderer.prototype.image = function(href, title, text) { + var out = '' + text + '/g, '>') + .replace(/"/g, '"') + .replace(/'/g, '''); + } + + function replace(regex, opt) { + regex = regex.source; + opt = opt || ''; + return function self(name, val) { + if (!name) return new RegExp(regex, opt); + val = val.source || val; + val = val.replace(/(^|[^\[])\^/g, '$1'); + regex = regex.replace(name, val); + return self; + }; + } + + function noop() {} + noop.exec = noop; + + function merge(obj) { + var i = 1 + , target + , key; + + for (; i < arguments.length; i++) { + target = arguments[i]; + for (key in target) { + if (Object.prototype.hasOwnProperty.call(target, key)) { + obj[key] = target[key]; + } + } + } + + return obj; + } + + + /** + * Marked + */ + + function marked(src, opt, callback) { + if (callback || typeof opt === 'function') { + if (!callback) { + callback = opt; + opt = null; + } + + opt = merge({}, marked.defaults, opt || {}); + + var highlight = opt.highlight + , tokens + , pending + , i = 0; + + try { + tokens = Lexer.lex(src, opt) + } catch (e) { + return callback(e); + } + + pending = tokens.length; + + var done = function() { + var out, err; + + try { + out = Parser.parse(tokens, opt); + } catch (e) { + err = e; + } + + opt.highlight = highlight; + + return err + ? callback(err) + : callback(null, out); + }; + + return done(); + } + try { + if (opt) opt = merge({}, marked.defaults, opt); + return Parser.parse(Lexer.lex(src, opt), opt); + } catch (e) { + e.message += '\nPlease report this to https://github.com/chjj/marked.'; + if ((opt || marked.defaults).silent) { + return '

    An error occured:

    '
+                    + escape(e.message + '', true)
+                    + '
    '; + } + throw e; + } + } + + /** + * Options + */ + + marked.options = + marked.setOptions = function(opt) { + merge(marked.defaults, opt); + return marked; + }; + + marked.defaults = { + gfm: true, + tables: true, + breaks: false, + pedantic: false, + sanitize: false, + smartLists: false, + silent: false, + smartypants: false, + renderer: new Renderer + }; + + /** + * Expose + */ + + marked.Parser = Parser; + marked.parser = Parser.parse; + + marked.Renderer = Renderer; + + marked.Lexer = Lexer; + marked.lexer = Lexer.lex; + + marked.InlineLexer = InlineLexer; + marked.inlineLexer = InlineLexer.output; + + marked.parse = marked; + + if (typeof exports === 'object') { + module.exports = marked; + } else if (typeof define === 'function' && define.amd) { + define(function() { return marked; }); + } else { + this.marked = marked; + } + +}).call(function() { + return this || (typeof window !== 'undefined' ? window : global); + }());