X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FembeddedWJmol.html;h=e8c9df328125766f446f4e6821477ca8a2e28ddb;hb=cebd1eaa580d3d1a08360d0d71661e7c5437918c;hp=e560f8cf004e33b1409c8274afc460cedb0664ab;hpb=92d3ddd8e9cf6f34759557f3ed85a12a1dd91c34;p=jalview.git
diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html
index e560f8c..e8c9df3 100644
--- a/examples/embeddedWJmol.html
+++ b/examples/embeddedWJmol.html
@@ -1,7 +1,7 @@
-
+
-
-Embedded JalviewLite talking to externally managed Jmol
+ Jalview and Jmol
+
+
+
+
+
+
+
+
+
+
+
+
@@ -73,7 +138,7 @@ function genHref()
var _jvA=new Object();
_jvA.attributes = {
code : 'jalview.bin.JalviewLite',
- archive : 'jalviewApplet.jar',
+ archive : 'jalviewApplet.jar,JmolApplet-12.2.4.jar',
width : '500',
height : '350',
mayscript : 'True',
@@ -96,166 +161,130 @@ function genHref()
embedded : "true",
showFullId : "false",
RGB : "F2F2FF",
- linkLabel_1 : "SRS",
- linkUrl_1 : "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2"
+ linkLabel_1 : "EMBL-EBI Search",
+ linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"
,
linkLabel_2 : "Uniprot"
,
- linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$",
+ linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$",
APPLICATION_URL : "http://www.jalview.org/services/launchApp",
- PDBfile : "1gaq.txt FER1_MAIZE"
+ PDBfile : "1gaq.txt FER1_MAIZE",
+ permissions : "sandbox"
};
jmolSetCallback("hoverCallback","_jmolhover");
jmolSetCallback("pickCallback","_jmolpick");
modeltofiles+="1gaq.txt";
-
-
-
-
-
-
-
-
-
-
+
+