X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FembeddedWJmol.html;h=ec17568d3d07b7489fb326a091da7b0f8045a46c;hb=03915ab617c8d969292429aab786e22d074d046c;hp=24f740616e25c4a24d70c9a58cff62706caf1907;hpb=b67713669fda994d1e56b46fad3f8bbbceda2d91;p=jalview.git diff --git a/examples/embeddedWJmol.html b/examples/embeddedWJmol.html index 24f7406..ec17568 100644 --- a/examples/embeddedWJmol.html +++ b/examples/embeddedWJmol.html @@ -1,29 +1,88 @@ - + - + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) + * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + --> -Embedded JalviewLite talking to externally managed Jmol - + + @@ -101,12 +160,12 @@ function genHref() embedded : "true", showFullId : "false", RGB : "F2F2FF", - linkLabel_1 : "SRS", - linkUrl_1 : "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2" + linkLabel_1 : "EMBL-EBI Search", + linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$" , linkLabel_2 : "Uniprot" , - linkUrl_2 : "http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$", + linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$", APPLICATION_URL : "http://www.jalview.org/services/launchApp", PDBfile : "1gaq.txt FER1_MAIZE", permissions : "sandbox" @@ -115,149 +174,113 @@ function genHref() jmolSetCallback("pickCallback","_jmolpick"); modeltofiles+="1gaq.txt"; - - - - - + - - - + +
- + +
- + -